miRNA display CGI


Results 21 - 40 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 12486 0.66 0.898693
Target:  5'- cGC-GUGGCgGCGGGGGcGGCcaagaaCCCGGGCc -3'
miRNA:   3'- uUGuUACUG-CGUUUUC-CCG------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 13237 0.75 0.40511
Target:  5'- cGCGAUGGC-CAGcGGGGCCaCgCGGGCg -3'
miRNA:   3'- uUGUUACUGcGUUuUCCCGG-G-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 13278 0.68 0.827272
Target:  5'- uGCGGUGccggcccugugcgcGCGCuacgcGGGCgCCGGGCu -3'
miRNA:   3'- uUGUUAC--------------UGCGuuuu-CCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 13308 0.66 0.877763
Target:  5'- cGCGGUcgucGAgGCAGAcGGGCUCCggcacGGGCg -3'
miRNA:   3'- uUGUUA----CUgCGUUUuCCCGGGG-----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 13387 0.69 0.735927
Target:  5'- cACGuccgGGCGCGccgcGGGCCCUGGGa -3'
miRNA:   3'- uUGUua--CUGCGUuuu-CCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 14132 0.67 0.862651
Target:  5'- gGGCGAUGG-GC---GGGGCCCgcgccUGGGCg -3'
miRNA:   3'- -UUGUUACUgCGuuuUCCCGGG-----GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 14457 0.67 0.862651
Target:  5'- uGCGcgGcCGCGGccucuGGGUCuCCGGGCu -3'
miRNA:   3'- uUGUuaCuGCGUUuu---CCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 15015 0.71 0.632503
Target:  5'- cGCGGUGgggccGCGCGAGccgcGGCCgCCGGGCg -3'
miRNA:   3'- uUGUUAC-----UGCGUUUuc--CCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 15111 0.67 0.846664
Target:  5'- gGGCGGU--CGgGGGAGGGCcuaggccgcucaCCCGGGCa -3'
miRNA:   3'- -UUGUUAcuGCgUUUUCCCG------------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 15296 0.7 0.683753
Target:  5'- cGACGcUGACcggcacgGCGucGGGGGCCgCGGGCg -3'
miRNA:   3'- -UUGUuACUG-------CGUu-UUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 15733 0.66 0.884977
Target:  5'- -uCGAUG-CGCAAccugGAGGGCgCCuaugccgacgCGGGCg -3'
miRNA:   3'- uuGUUACuGCGUU----UUCCCG-GG----------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 16753 0.67 0.846664
Target:  5'- cGACGcUGACGagGAcGGGGCUuccgauuaggCCGGGCg -3'
miRNA:   3'- -UUGUuACUGCg-UUuUCCCGG----------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 16832 0.67 0.862651
Target:  5'- -uCGGUGGCGCGGGcaucGGGGCggcgCUCGaGGCg -3'
miRNA:   3'- uuGUUACUGCGUUU----UCCCG----GGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 16936 0.68 0.784691
Target:  5'- cAGCGAUG-CGUuucgcAGGGCCucguaagagggCCGGGCg -3'
miRNA:   3'- -UUGUUACuGCGuuu--UCCCGG-----------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 17706 0.66 0.911437
Target:  5'- cGCcAUGuC-CAAGAGGGCCa-GGGCg -3'
miRNA:   3'- uUGuUACuGcGUUUUCCCGGggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 18189 0.66 0.884977
Target:  5'- cAugGcgGACGCGcgGcGaGGUCUCGGGCu -3'
miRNA:   3'- -UugUuaCUGCGUuuU-C-CCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 19489 0.66 0.877763
Target:  5'- cGCAcgGACGCGAAcauGGauGGUCCCGGu- -3'
miRNA:   3'- uUGUuaCUGCGUUU---UC--CCGGGGCCcg -5'
6603 3' -55.1 NC_001847.1 + 20642 0.75 0.40511
Target:  5'- cAGCGA-GGCGcCAAAGGGGCUCagcaGGGCg -3'
miRNA:   3'- -UUGUUaCUGC-GUUUUCCCGGGg---CCCG- -5'
6603 3' -55.1 NC_001847.1 + 21351 0.68 0.829859
Target:  5'- aGACGAUGcGCGCcGucGGcggcucgggccGCCUCGGGCg -3'
miRNA:   3'- -UUGUUAC-UGCGuUuuCC-----------CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 21560 0.66 0.896027
Target:  5'- uGACAAgggccggggagagGGCGggaGAGGGGGCCgCgGGGCc -3'
miRNA:   3'- -UUGUUa------------CUGCg--UUUUCCCGG-GgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.