miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 21752 0.71 0.642997
Target:  5'- cGCGc--GCGCGGGGGGGCCgCCGGcGCc -3'
miRNA:   3'- uUGUuacUGCGUUUUCCCGG-GGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 21790 0.68 0.803256
Target:  5'- cGGCcg-GGCGC----GGGuCCCCGGGCc -3'
miRNA:   3'- -UUGuuaCUGCGuuuuCCC-GGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 22117 0.72 0.580195
Target:  5'- cGACAGcgGGCGCGcccuGGGCCCgGcGGCg -3'
miRNA:   3'- -UUGUUa-CUGCGUuuu-CCCGGGgC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 22383 0.67 0.862651
Target:  5'- -----cGGgGCAGAAGGcGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUgCGUUUUCC-CGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 22631 0.74 0.479276
Target:  5'- cGCAG-GGCGCGuccggGGAGGgcgggcuuGCCCCGGGCg -3'
miRNA:   3'- uUGUUaCUGCGU-----UUUCC--------CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 24086 0.67 0.854764
Target:  5'- gGGCAcgGuCGUGAGAgcuggcgcGGGUCCCaGGGCu -3'
miRNA:   3'- -UUGUuaCuGCGUUUU--------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 24330 0.66 0.882837
Target:  5'- cGCGcgGGgGCGAuguccaaguggaggGGGGGCCCgagcaGGGCc -3'
miRNA:   3'- uUGUuaCUgCGUU--------------UUCCCGGGg----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 25951 0.69 0.74591
Target:  5'- gAGCGGcuagGGC-CAAAGGGGgCCgCGGGCg -3'
miRNA:   3'- -UUGUUa---CUGcGUUUUCCCgGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 26489 0.71 0.632503
Target:  5'- gGGCGGgccUGGUGCAAGGcGGGCCugCCGGGCg -3'
miRNA:   3'- -UUGUU---ACUGCGUUUU-CCCGG--GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 27444 0.67 0.854764
Target:  5'- cGCAGcGGCGCG--GGGGCCCUGccGCu -3'
miRNA:   3'- uUGUUaCUGCGUuuUCCCGGGGCc-CG- -5'
6603 3' -55.1 NC_001847.1 + 27798 0.68 0.784691
Target:  5'- -----aGACGCG--GGGGCCaCCgaGGGCg -3'
miRNA:   3'- uuguuaCUGCGUuuUCCCGG-GG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 27927 0.68 0.829859
Target:  5'- cGCGGagGACGCGGAcaggccuGGGCCgCGGcGCg -3'
miRNA:   3'- uUGUUa-CUGCGUUUu------CCCGGgGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 28306 0.68 0.812299
Target:  5'- aAGCGGcccCGCGAGAggcGGGCgCCGGGCc -3'
miRNA:   3'- -UUGUUacuGCGUUUU---CCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 28345 0.66 0.884977
Target:  5'- cGCGggGccGCGCGcccGGGCCCCcGGCg -3'
miRNA:   3'- uUGUuaC--UGCGUuuuCCCGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 28559 0.67 0.862651
Target:  5'- cGGCGcgGGCGaCAcccgcGAGGGCCuCUGGGa -3'
miRNA:   3'- -UUGUuaCUGC-GUu----UUCCCGG-GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 28786 0.69 0.735927
Target:  5'- uGCAGcGGCGCGugcAGGGCUgCCGGGg -3'
miRNA:   3'- uUGUUaCUGCGUuu-UCCCGG-GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 30481 0.71 0.653482
Target:  5'- cGCuggGACGCGAucGgcgcGGCCCuCGGGCg -3'
miRNA:   3'- uUGuuaCUGCGUUuuC----CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 30656 0.66 0.891955
Target:  5'- aGGCGGugcUGGCGCuguuGGAGGGCuaCCCGGa- -3'
miRNA:   3'- -UUGUU---ACUGCGu---UUUCCCG--GGGCCcg -5'
6603 3' -55.1 NC_001847.1 + 30997 0.68 0.829859
Target:  5'- cGCAG-GGCGCGGcgcuGGGGCUCgGGGa -3'
miRNA:   3'- uUGUUaCUGCGUUu---UCCCGGGgCCCg -5'
6603 3' -55.1 NC_001847.1 + 31265 0.78 0.308444
Target:  5'- gGACuggGACGCGGAccAGGGCCCgCGGGa -3'
miRNA:   3'- -UUGuuaCUGCGUUU--UCCCGGG-GCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.