miRNA display CGI


Results 61 - 80 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 31384 0.66 0.905188
Target:  5'- -----cGGCGCAGucGu-CCCCGGGCg -3'
miRNA:   3'- uuguuaCUGCGUUuuCccGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 31962 0.78 0.294153
Target:  5'- cGCGcgGcGCGCGGGGcGGGCCCCGGGg -3'
miRNA:   3'- uUGUuaC-UGCGUUUU-CCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 32044 0.67 0.870319
Target:  5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3'
miRNA:   3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 32096 0.76 0.362584
Target:  5'- gGGCGucggGGCGCGAGGcccgggcucGGGCCCCcGGGCg -3'
miRNA:   3'- -UUGUua--CUGCGUUUU---------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 32140 0.78 0.280384
Target:  5'- gGGCGggGGCGgGGgcGGGGGCCCCGGGg -3'
miRNA:   3'- -UUGUuaCUGCgUU--UUCCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 32170 0.66 0.877029
Target:  5'- -cCAA-GACGCAGAAccccGGCCCCccggccgGGGCc -3'
miRNA:   3'- uuGUUaCUGCGUUUUc---CCGGGG-------CCCG- -5'
6603 3' -55.1 NC_001847.1 + 32215 0.66 0.880676
Target:  5'- gGGCGGggccggGGCGCGGggcgccggacccAGGGGCggagcccagagcgggCCCGGGCc -3'
miRNA:   3'- -UUGUUa-----CUGCGUU------------UUCCCG---------------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32315 0.66 0.884977
Target:  5'- -cCGggGuCGC-AGGGGGCCCgCGcGGCg -3'
miRNA:   3'- uuGUuaCuGCGuUUUCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 32342 0.7 0.688941
Target:  5'- -----cGGCGCGGAGGGGgCCCagcccccgcgcggggGGGCg -3'
miRNA:   3'- uuguuaCUGCGUUUUCCCgGGG---------------CCCG- -5'
6603 3' -55.1 NC_001847.1 + 32539 0.66 0.891955
Target:  5'- aGGCGAUGcgcGCGCAGcccucGGCgCUGGGCg -3'
miRNA:   3'- -UUGUUAC---UGCGUUuuc--CCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32784 0.67 0.846664
Target:  5'- ----cUGugGgGGGAGGGCCggGGGCg -3'
miRNA:   3'- uuguuACugCgUUUUCCCGGggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 33313 0.68 0.82117
Target:  5'- cGCAAcGGCGCAcaccGAAGacGGCCUCGcGGCc -3'
miRNA:   3'- uUGUUaCUGCGU----UUUC--CCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 33513 0.66 0.891955
Target:  5'- cGGCGGcgGGCGCcgccgcGGaGGCgCCGGGCg -3'
miRNA:   3'- -UUGUUa-CUGCGuuu---UC-CCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 33562 0.7 0.695149
Target:  5'- -----aGGCGCAcgcGGGGGGCgucuggcgcggCCCGGGCu -3'
miRNA:   3'- uuguuaCUGCGU---UUUCCCG-----------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 33879 0.7 0.684791
Target:  5'- gGGCAGUGAgGagggaCGAGGGGaGCgCCGGGCc -3'
miRNA:   3'- -UUGUUACUgC-----GUUUUCC-CGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 33946 0.66 0.889886
Target:  5'- cGCGA-GGCGCuGGAGaacccgagcgcgcuGGCgCCGGGCg -3'
miRNA:   3'- uUGUUaCUGCGuUUUC--------------CCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 34013 0.68 0.781855
Target:  5'- cGGCGGUGcugggcaccGCGCugggccaggcgauGGGCCCCGcGGCg -3'
miRNA:   3'- -UUGUUAC---------UGCGuuuu---------CCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 34105 0.68 0.829859
Target:  5'- cGGCGGguGCGCAAAuuGGGaCCCCGGccGCg -3'
miRNA:   3'- -UUGUUacUGCGUUUu-CCC-GGGGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 34808 0.66 0.884977
Target:  5'- cGCGGccgcUGGCGCGGca-GGCCgaCCGGGCg -3'
miRNA:   3'- uUGUU----ACUGCGUUuucCCGG--GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 35567 0.72 0.601054
Target:  5'- -----cGAcCGCGAcGAGGGCgCCGGGCu -3'
miRNA:   3'- uuguuaCU-GCGUU-UUCCCGgGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.