miRNA display CGI


Results 81 - 100 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 35992 0.67 0.854764
Target:  5'- cGCAGccGCGCugcAGGcGGCCgCGGGCg -3'
miRNA:   3'- uUGUUacUGCGuu-UUC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 36064 0.72 0.569821
Target:  5'- aGACAGgccccaGCAcgaaGAGGcGGCCCCGGGCc -3'
miRNA:   3'- -UUGUUacug--CGU----UUUC-CCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 36486 0.71 0.632503
Target:  5'- uGCGcgGGCGCGu-GGcGGCCCUucuGGGCg -3'
miRNA:   3'- uUGUuaCUGCGUuuUC-CCGGGG---CCCG- -5'
6603 3' -55.1 NC_001847.1 + 37019 0.67 0.846664
Target:  5'- cACcGUG-CGgAGcGGGGCgCCGGGCu -3'
miRNA:   3'- uUGuUACuGCgUUuUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 38548 0.67 0.854764
Target:  5'- uAAUggUGACGUGGAugucucgccGGGCgCCCaGGCa -3'
miRNA:   3'- -UUGuuACUGCGUUUu--------CCCG-GGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 39628 0.71 0.663948
Target:  5'- gGGCAAgccUGGCGCGcccgccaGGCCCaCGGGCg -3'
miRNA:   3'- -UUGUU---ACUGCGUuuuc---CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 41173 0.67 0.837519
Target:  5'- cGGCGcgGGCGCGcguguuaAGAGGGCgCCCagaaaaGGCg -3'
miRNA:   3'- -UUGUuaCUGCGU-------UUUCCCG-GGGc-----CCG- -5'
6603 3' -55.1 NC_001847.1 + 41508 0.86 0.09198
Target:  5'- gGACAucAUGGCGCGAAAGGGCCgUGGGUc -3'
miRNA:   3'- -UUGU--UACUGCGUUUUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 41614 0.77 0.346464
Target:  5'- uAACccgGGCGCuccGGGGCCgCCGGGCg -3'
miRNA:   3'- -UUGuuaCUGCGuuuUCCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 41872 0.66 0.877763
Target:  5'- cGACAucgcGGCGCGAuacGGCCCgCGcGGCg -3'
miRNA:   3'- -UUGUua--CUGCGUUuucCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 42439 0.66 0.891955
Target:  5'- cGGCGAUGGCGCGcgcucguGGGCagaGGGUg -3'
miRNA:   3'- -UUGUUACUGCGUuuu----CCCGgggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 42722 0.66 0.905188
Target:  5'- ----uUGGCGCGGcGGGcGGCCgCgCGGGCg -3'
miRNA:   3'- uuguuACUGCGUU-UUC-CCGG-G-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 43117 0.66 0.877763
Target:  5'- -cCGAUGACGUGGAGcGGCuCUCGcGGCu -3'
miRNA:   3'- uuGUUACUGCGUUUUcCCG-GGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 43118 0.76 0.379218
Target:  5'- cGGCGGUGccCGCAGAcggcgcGGGCCCgCGGGCg -3'
miRNA:   3'- -UUGUUACu-GCGUUUu-----CCCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 43232 0.7 0.72585
Target:  5'- -cCGGUGGCGguG-GGGGCgCgCGGGCg -3'
miRNA:   3'- uuGUUACUGCguUuUCCCG-GgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 43643 0.67 0.846664
Target:  5'- uGCAG-GACGCGcgcGAGGGCU-CGGGUg -3'
miRNA:   3'- uUGUUaCUGCGUu--UUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 44600 0.67 0.862651
Target:  5'- ------cGCGCGGcGAGGGCCgCCaGGGCg -3'
miRNA:   3'- uuguuacUGCGUU-UUCCCGG-GG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 44927 0.71 0.632503
Target:  5'- cGACcGUGuCGCu--GGGGCgCUCGGGCu -3'
miRNA:   3'- -UUGuUACuGCGuuuUCCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 46219 0.66 0.907717
Target:  5'- cGCGcAUGGCGCAGAgccgcgcgcgcgcaaGGGagccGCCCCcGGCg -3'
miRNA:   3'- uUGU-UACUGCGUUU---------------UCC----CGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 46906 0.71 0.632503
Target:  5'- cAGCGAggcuucggggGGCGCGucgggcccGGGCUCCGGGCc -3'
miRNA:   3'- -UUGUUa---------CUGCGUuuu-----CCCGGGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.