miRNA display CGI


Results 101 - 120 of 278 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 47841 0.67 0.838361
Target:  5'- -cCAAUGcGCGCAAAucggccGcGGCCgCGGGCc -3'
miRNA:   3'- uuGUUAC-UGCGUUUu-----C-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 48174 0.69 0.735927
Target:  5'- uAGCAGcaugGGCGUGAAcacGGGCUCgGGGCg -3'
miRNA:   3'- -UUGUUa---CUGCGUUUu--CCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 48378 0.66 0.884977
Target:  5'- cGACcGUGGCGCcgccgGGccGGGCCUCGGcgGCa -3'
miRNA:   3'- -UUGuUACUGCG-----UUuuCCCGGGGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 49048 0.67 0.870319
Target:  5'- --uGGUGGCGCGcagcucacGGCCgCGGGCg -3'
miRNA:   3'- uugUUACUGCGUuuuc----CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 49200 0.73 0.539001
Target:  5'- aGACGGUagcccuCGCGccGGGGCCCgCGGGCu -3'
miRNA:   3'- -UUGUUAcu----GCGUuuUCCCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 49563 0.69 0.752836
Target:  5'- uACAAUG-CGCGGAaccucucggccgacGGcGGCgCCUGGGCg -3'
miRNA:   3'- uUGUUACuGCGUUU--------------UC-CCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 49994 0.72 0.608381
Target:  5'- cGCGAgagGAgcccgcgcgcccacCGCcugcuGGGCCCCGGGCg -3'
miRNA:   3'- uUGUUa--CU--------------GCGuuuu-CCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 50043 0.68 0.812299
Target:  5'- cGCGG-GGCGCGGuGGcGGCCgCGGGUc -3'
miRNA:   3'- uUGUUaCUGCGUUuUC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 50082 0.66 0.911437
Target:  5'- gGACccgGGCGCGGccAAGGcugccGCgCCGGGCg -3'
miRNA:   3'- -UUGuuaCUGCGUU--UUCC-----CGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 50270 0.67 0.838361
Target:  5'- cGCug-GGCGCGuacguGGGCCgccuagCCGGGCu -3'
miRNA:   3'- uUGuuaCUGCGUuuu--CCCGG------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 51373 0.68 0.784691
Target:  5'- uGACGGUGACGCucgcGGaGGCCgCGGucGCg -3'
miRNA:   3'- -UUGUUACUGCGuuu-UC-CCGGgGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 51599 0.66 0.898693
Target:  5'- gAGCGGcGGCGUGAAcauucucagcGGGCCgCUGGGCu -3'
miRNA:   3'- -UUGUUaCUGCGUUUu---------CCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 51969 0.76 0.379218
Target:  5'- cGGCAGUGAUGCAcuGGGuGCgCCGGcGCa -3'
miRNA:   3'- -UUGUUACUGCGUuuUCC-CGgGGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 52892 0.66 0.891955
Target:  5'- aGGCGAUGGC-CAGuccuaGGUCCgCGGGCa -3'
miRNA:   3'- -UUGUUACUGcGUUuuc--CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 53355 0.67 0.862651
Target:  5'- -----cGACGCGcugcuGGcGGCCgCGGGCa -3'
miRNA:   3'- uuguuaCUGCGUuu---UC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 53640 0.66 0.891955
Target:  5'- cGCGuccGCGaCAAAGaccGGGCaCCCGGGCc -3'
miRNA:   3'- uUGUuacUGC-GUUUU---CCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 54521 0.68 0.79405
Target:  5'- gGGCGGUGGgGC---GGGGCCguCCGGGg -3'
miRNA:   3'- -UUGUUACUgCGuuuUCCCGG--GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 54554 0.71 0.62201
Target:  5'- cGGCGGgggcGGCGCGGAGGacgacGGCCCCgcGGGCu -3'
miRNA:   3'- -UUGUUa---CUGCGUUUUC-----CCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 54570 0.68 0.800511
Target:  5'- cGCGcccGUGACGCGcgcgagcgauguucGGGGGcGCCgUGGGCg -3'
miRNA:   3'- uUGU---UACUGCGU--------------UUUCC-CGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 55275 0.66 0.898693
Target:  5'- -----cGGCGCc---GGGCCCggaCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuuCCCGGG---GCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.