miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 116401 0.83 0.14892
Target:  5'- cGGCGGcGGCGCucu-GGGCCCCGGGCc -3'
miRNA:   3'- -UUGUUaCUGCGuuuuCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 116158 0.67 0.854764
Target:  5'- -----aGGCGCu--GGcGGCCgCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuUC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 116099 0.67 0.854764
Target:  5'- cGACGAUGACGacgccGGGCCUgccggCGGGg -3'
miRNA:   3'- -UUGUUACUGCguuuuCCCGGG-----GCCCg -5'
6603 3' -55.1 NC_001847.1 + 116044 0.67 0.862651
Target:  5'- cGCAcuuuGUGACgGCAGccucGGGCaCCgGGGCg -3'
miRNA:   3'- uUGU----UACUG-CGUUuu--CCCG-GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 115733 0.68 0.784691
Target:  5'- -cCAcgGGCGCGcuGGuGGCCauGGGCa -3'
miRNA:   3'- uuGUuaCUGCGUuuUC-CCGGggCCCG- -5'
6603 3' -55.1 NC_001847.1 + 115519 0.73 0.50877
Target:  5'- cGCGccGACGCc---GGcGCCCCGGGCc -3'
miRNA:   3'- uUGUuaCUGCGuuuuCC-CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 115274 0.7 0.72585
Target:  5'- uGGCGGUGGCGggcuaAGccGGcGCCCCcGGGCg -3'
miRNA:   3'- -UUGUUACUGCg----UUuuCC-CGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 114894 0.7 0.674388
Target:  5'- uAGCAcAUGGCGCGcgcGGGGGcgaGCCCCugGGGCa -3'
miRNA:   3'- -UUGU-UACUGCGU---UUUCC---CGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 114286 0.75 0.40511
Target:  5'- cGACGAUGugGCA--GGGGCguucuugCCGGGCc -3'
miRNA:   3'- -UUGUUACugCGUuuUCCCGg------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 113546 0.68 0.82117
Target:  5'- cAGCGAguuuaggGGgGC---GGGGCCCCGcGGCc -3'
miRNA:   3'- -UUGUUa------CUgCGuuuUCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 112045 0.73 0.50877
Target:  5'- cGCGGUGGCGCGcgcgggcuacguAGAGGGCgCCCucGGCg -3'
miRNA:   3'- uUGUUACUGCGU------------UUUCCCG-GGGc-CCG- -5'
6603 3' -55.1 NC_001847.1 + 111339 0.67 0.837519
Target:  5'- gAGCAGUGgucgguggccgccGCGCu---GGGCgaccucgcgCCCGGGCa -3'
miRNA:   3'- -UUGUUAC-------------UGCGuuuuCCCG---------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 109372 0.66 0.891955
Target:  5'- cGCGGaaugGGCGCAGcuGGGCUgCGGuGCc -3'
miRNA:   3'- uUGUUa---CUGCGUUuuCCCGGgGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 108484 0.67 0.838361
Target:  5'- -----aGGCGCGAAGguGGGCCggCCGGGg -3'
miRNA:   3'- uuguuaCUGCGUUUU--CCCGG--GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 108078 0.73 0.528851
Target:  5'- cGCGGUGcCGCccGGGGGGCUgCGGGCc -3'
miRNA:   3'- uUGUUACuGCGu-UUUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 107828 0.77 0.315786
Target:  5'- cGGCGGcGGCGCGGAGGGGaagCUCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGUUUUCCCg--GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 107042 0.79 0.260697
Target:  5'- cGGCGGUGuCGCGcgc-GGCCCCGGGCa -3'
miRNA:   3'- -UUGUUACuGCGUuuucCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 106786 0.76 0.354459
Target:  5'- cGCGAgGGCGCc--GGGGgCCCGGGCg -3'
miRNA:   3'- uUGUUaCUGCGuuuUCCCgGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 106513 0.69 0.74591
Target:  5'- gAACAcgGcCGC----GGGCCCCGcGGCc -3'
miRNA:   3'- -UUGUuaCuGCGuuuuCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 105083 0.69 0.732914
Target:  5'- cGGCAcgcGGCGgAAGccgccgucggcggcGGGGCCgCCGGGCg -3'
miRNA:   3'- -UUGUua-CUGCgUUU--------------UCCCGG-GGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.