miRNA display CGI


Results 61 - 80 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 104885 0.76 0.396356
Target:  5'- cAGCGGUGGCgGCGAGcgccccgcGGGGCCCgCGcGGCg -3'
miRNA:   3'- -UUGUUACUG-CGUUU--------UCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 104534 0.68 0.82117
Target:  5'- -----cGGCGCugcgcGGcGGCCCCGGGg -3'
miRNA:   3'- uuguuaCUGCGuuu--UC-CCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 104433 0.68 0.82117
Target:  5'- cGCGcgGGCGUcc-AGGaGCgCCGGGCu -3'
miRNA:   3'- uUGUuaCUGCGuuuUCC-CGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 104345 0.66 0.905188
Target:  5'- -----cGGCGCGcgcGAAGGcGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUGCGU---UUUCC-CGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 103574 0.72 0.580195
Target:  5'- gAGCuagGuACGCGuAGAGGGCCCUcggGGGCa -3'
miRNA:   3'- -UUGuuaC-UGCGU-UUUCCCGGGG---CCCG- -5'
6603 3' -55.1 NC_001847.1 + 103492 0.72 0.580195
Target:  5'- -----gGGCGCGc--GGGCUCCGGGCc -3'
miRNA:   3'- uuguuaCUGCGUuuuCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 103219 0.7 0.72585
Target:  5'- -----cGAC-CGAgaccGAGGGCCCgGGGCg -3'
miRNA:   3'- uuguuaCUGcGUU----UUCCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 103029 0.69 0.74591
Target:  5'- -----cGGCGCccGGGGGCccgagCCCGGGCc -3'
miRNA:   3'- uuguuaCUGCGuuUUCCCG-----GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 102883 0.66 0.891955
Target:  5'- -----cGGCGCGGc-GGGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUGCGUUuuCCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 102686 0.73 0.539001
Target:  5'- gGGCGG-GGCGgGGGcAGGGCgCCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCgUUU-UCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 102652 0.68 0.829859
Target:  5'- --gGGUGACGCGccgGGAGcGGCCgCgaGGGCg -3'
miRNA:   3'- uugUUACUGCGU---UUUC-CCGG-Gg-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 102027 0.66 0.884977
Target:  5'- -----cGcCGCAGGuacGGGGCCCCcGGCc -3'
miRNA:   3'- uuguuaCuGCGUUU---UCCCGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 101136 0.66 0.898693
Target:  5'- uGugGAgaugGGCGCGGGggcuGGGGCCggggCCGGGg -3'
miRNA:   3'- -UugUUa---CUGCGUUU----UCCCGG----GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 100513 0.66 0.891955
Target:  5'- uGCGGUGugGU----GGGCUgCGGGUc -3'
miRNA:   3'- uUGUUACugCGuuuuCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 99326 0.68 0.82117
Target:  5'- -uCGAUG-CGCuccgcAAAGGGCUCCauGGGCc -3'
miRNA:   3'- uuGUUACuGCGu----UUUCCCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 96415 0.69 0.755787
Target:  5'- cGGCAAUGGCggggccggcgGCAGgcGcGGCCCCGGagGCa -3'
miRNA:   3'- -UUGUUACUG----------CGUUuuC-CCGGGGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 96193 0.7 0.674388
Target:  5'- cGCcAUGGCGCucgcGGcCCCCGGGCc -3'
miRNA:   3'- uUGuUACUGCGuuuuCCcGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95778 0.7 0.72585
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCg -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95751 0.66 0.877763
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCn -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95724 0.68 0.812299
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCc -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.