miRNA display CGI


Results 81 - 100 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 95697 0.68 0.812299
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCc -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95670 0.68 0.812299
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCc -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95643 0.68 0.812299
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCc -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95261 0.67 0.854764
Target:  5'- cGCGAUcgggGGCGCGAucGGGGGCgCCGGcaaGCu -3'
miRNA:   3'- uUGUUA----CUGCGUU--UUCCCGgGGCC---CG- -5'
6603 3' -55.1 NC_001847.1 + 93293 0.77 0.315786
Target:  5'- uGCAAUGugGCGAGGGGgacgugccccaGCCCUGGGa -3'
miRNA:   3'- uUGUUACugCGUUUUCC-----------CGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 91997 0.67 0.870319
Target:  5'- cAGCGAcugcgGGCGCAGcgcccgcGGGCCCgcgccgucugCGGGCa -3'
miRNA:   3'- -UUGUUa----CUGCGUUuu-----CCCGGG----------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 91872 0.68 0.79405
Target:  5'- cGCGcgGcguCGCAGcAGGuGCCCCccGGGCg -3'
miRNA:   3'- uUGUuaCu--GCGUUuUCC-CGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 91398 0.71 0.653482
Target:  5'- gGACGAUGACGUGAAcgucGGcGGCCCUgcuGGGa -3'
miRNA:   3'- -UUGUUACUGCGUUU----UC-CCGGGG---CCCg -5'
6603 3' -55.1 NC_001847.1 + 90836 0.68 0.82117
Target:  5'- gGGCGA-GAUcaGCGAgcGGcGCCCCGGGg -3'
miRNA:   3'- -UUGUUaCUG--CGUUuuCC-CGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 90772 0.68 0.784691
Target:  5'- gAACGccuGCGCGgcGAGGGGCCCguucagcagcccCGGGCg -3'
miRNA:   3'- -UUGUuacUGCGU--UUUCCCGGG------------GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 90745 0.73 0.528851
Target:  5'- -----cGGCGCGuggccGGGCCCCGGGa -3'
miRNA:   3'- uuguuaCUGCGUuuu--CCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 90376 0.66 0.911437
Target:  5'- uGCug-GACGCGGAccacGGCCCCcGGCc -3'
miRNA:   3'- uUGuuaCUGCGUUUuc--CCGGGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 90305 0.7 0.695149
Target:  5'- cGGCGAgcGCGCGuucgguGGGGCCgCCGGGg -3'
miRNA:   3'- -UUGUUacUGCGUuu----UCCCGG-GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 89707 0.69 0.74591
Target:  5'- -----cGcCGCGAcGGGcGCCCUGGGCu -3'
miRNA:   3'- uuguuaCuGCGUUuUCC-CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 89642 0.68 0.803256
Target:  5'- cGGCGGcGGCGCcc----GCCCCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGuuuuccCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 89538 0.68 0.79405
Target:  5'- cGGCAGcGACGgguCAGAuuGGCCCgCGGGCc -3'
miRNA:   3'- -UUGUUaCUGC---GUUUucCCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 88803 0.69 0.775188
Target:  5'- -cCGAUGcCGCcGAcGcGGCCCgCGGGCg -3'
miRNA:   3'- uuGUUACuGCGuUUuC-CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 88369 0.7 0.715688
Target:  5'- cGCGcgGGCGCGGcGGaccGGCCCCGcgcGGCg -3'
miRNA:   3'- uUGUuaCUGCGUUuUC---CCGGGGC---CCG- -5'
6603 3' -55.1 NC_001847.1 + 88248 0.74 0.489016
Target:  5'- -----cGGCGCGGcgcGGGGCgCCGGGCg -3'
miRNA:   3'- uuguuaCUGCGUUu--UCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 87577 0.67 0.862651
Target:  5'- -----cGGCGCGugcGcGGCCgCCGGGCu -3'
miRNA:   3'- uuguuaCUGCGUuuuC-CCGG-GGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.