miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 68824 1.1 0.002168
Target:  5'- gAACAAUGACGCAAAAGGGCCCCGGGCg -3'
miRNA:   3'- -UUGUUACUGCGUUUUCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 116452 0.74 0.498849
Target:  5'- uGGCGGUGACGCGGGccgugcugcGGGGCCUCGcGUa -3'
miRNA:   3'- -UUGUUACUGCGUUU---------UCCCGGGGCcCG- -5'
6603 3' -55.1 NC_001847.1 + 8862 0.73 0.528851
Target:  5'- uGCugcUGGCGCAAuuGGGCCCCaGaGCg -3'
miRNA:   3'- uUGuu-ACUGCGUUuuCCCGGGGcC-CG- -5'
6603 3' -55.1 NC_001847.1 + 87395 0.66 0.911437
Target:  5'- gGACAAguacuUGcGCGCGGGcGGGGCCCCGcccGCc -3'
miRNA:   3'- -UUGUU-----AC-UGCGUUU-UCCCGGGGCc--CG- -5'
6603 3' -55.1 NC_001847.1 + 134775 0.78 0.294153
Target:  5'- cGCGcgGcGCGCGGGGcGGGCCCCGGGg -3'
miRNA:   3'- uUGUuaC-UGCGUUUU-CCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 134078 0.78 0.308444
Target:  5'- gGACuggGACGCGGAccAGGGCCCgCGGGa -3'
miRNA:   3'- -UUGuuaCUGCGUUU--UCCCGGG-GCCCg -5'
6603 3' -55.1 NC_001847.1 + 106786 0.76 0.354459
Target:  5'- cGCGAgGGCGCc--GGGGgCCCGGGCg -3'
miRNA:   3'- uUGUUaCUGCGuuuUCCCgGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 134909 0.76 0.362584
Target:  5'- gGGCGucggGGCGCGAGGcccgggcucGGGCCCCcGGGCg -3'
miRNA:   3'- -UUGUua--CUGCGUUUU---------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 104885 0.76 0.396356
Target:  5'- cAGCGGUGGCgGCGAGcgccccgcGGGGCCCgCGcGGCg -3'
miRNA:   3'- -UUGUUACUG-CGUUU--------UCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 125444 0.74 0.479276
Target:  5'- cGCAG-GGCGCGuccggGGAGGgcgggcuuGCCCCGGGCg -3'
miRNA:   3'- uUGUUaCUGCGU-----UUUCC--------CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 114286 0.75 0.40511
Target:  5'- cGACGAUGugGCA--GGGGCguucuugCCGGGCc -3'
miRNA:   3'- -UUGUUACugCGUuuUCCCGg------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 43118 0.76 0.379218
Target:  5'- cGGCGGUGccCGCAGAcggcgcGGGCCCgCGGGCg -3'
miRNA:   3'- -UUGUUACu-GCGUUUu-----CCCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 41508 0.86 0.09198
Target:  5'- gGACAucAUGGCGCGAAAGGGCCgUGGGUc -3'
miRNA:   3'- -UUGU--UACUGCGUUUUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 8105 0.75 0.413984
Target:  5'- cGACGcgGcgccaGCGCAGGcgcGGGGCCCCagGGGCg -3'
miRNA:   3'- -UUGUuaC-----UGCGUUU---UCCCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 134953 0.78 0.280383
Target:  5'- gGGCGggGGCGgGGgcGGGGGCCCCGGGg -3'
miRNA:   3'- -UUGUuaCUGCgUU--UUCCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 51969 0.76 0.379218
Target:  5'- cGGCAGUGAUGCAcuGGGuGCgCCGGcGCa -3'
miRNA:   3'- -UUGUUACUGCGUuuUCC-CGgGGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 70362 0.74 0.479276
Target:  5'- gAACAA-GA-GCGAGGGGGCgCCgGGGCg -3'
miRNA:   3'- -UUGUUaCUgCGUUUUCCCG-GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 10005 0.73 0.50877
Target:  5'- cGGCAAUu-CGCAuccucgugugcGAGGGCUCCGGGCu -3'
miRNA:   3'- -UUGUUAcuGCGUu----------UUCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 60826 0.78 0.294153
Target:  5'- --uGAUGGCGC-GAGGGGCgCCCGcGGCg -3'
miRNA:   3'- uugUUACUGCGuUUUCCCG-GGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 107828 0.77 0.315786
Target:  5'- cGGCGGcGGCGCGGAGGGGaagCUCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGUUUUCCCg--GGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.