miRNA display CGI


Results 41 - 60 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 91398 0.71 0.653482
Target:  5'- gGACGAUGACGUGAAcgucGGcGGCCCUgcuGGGa -3'
miRNA:   3'- -UUGUUACUGCGUUU----UC-CCGGGG---CCCg -5'
6603 3' -55.1 NC_001847.1 + 116452 0.74 0.498849
Target:  5'- uGGCGGUGACGCGGGccgugcugcGGGGCCUCGcGUa -3'
miRNA:   3'- -UUGUUACUGCGUUU---------UCCCGGGGCcCG- -5'
6603 3' -55.1 NC_001847.1 + 134953 0.78 0.280383
Target:  5'- gGGCGggGGCGgGGgcGGGGGCCCCGGGg -3'
miRNA:   3'- -UUGUuaCUGCgUU--UUCCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 30481 0.71 0.653482
Target:  5'- cGCuggGACGCGAucGgcgcGGCCCuCGGGCg -3'
miRNA:   3'- uUGuuaCUGCGUUuuC----CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 41508 0.86 0.09198
Target:  5'- gGACAucAUGGCGCGAAAGGGCCgUGGGUc -3'
miRNA:   3'- -UUGU--UACUGCGUUUUCCCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 51373 0.68 0.784691
Target:  5'- uGACGGUGACGCucgcGGaGGCCgCGGucGCg -3'
miRNA:   3'- -UUGUUACUGCGuuu-UC-CCGGgGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 134775 0.78 0.294153
Target:  5'- cGCGcgGcGCGCGGGGcGGGCCCCGGGg -3'
miRNA:   3'- uUGUuaC-UGCGUUUU-CCCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 61475 0.69 0.775188
Target:  5'- -uCGAUGGCGCGGGccAGGGCgUCCaGGUa -3'
miRNA:   3'- uuGUUACUGCGUUU--UCCCG-GGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 121553 0.69 0.755787
Target:  5'- gAACGGcGcACGCGAGAGGGUUCgaaaaGGGCa -3'
miRNA:   3'- -UUGUUaC-UGCGUUUUCCCGGGg----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 131599 0.69 0.735927
Target:  5'- uGCAGcGGCGCGugcAGGGCUgCCGGGg -3'
miRNA:   3'- uUGUUaCUGCGUuu-UCCCGG-GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 78071 0.7 0.72585
Target:  5'- cACGAcGGCGCAGGAguccGGGCggcggCCGGGCu -3'
miRNA:   3'- uUGUUaCUGCGUUUU----CCCGg----GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 69326 0.7 0.695149
Target:  5'- -----gGGCGC----GGGCCUCGGGCg -3'
miRNA:   3'- uuguuaCUGCGuuuuCCCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 39628 0.71 0.663948
Target:  5'- gGGCAAgccUGGCGCGcccgccaGGCCCaCGGGCg -3'
miRNA:   3'- -UUGUU---ACUGCGUuuuc---CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 129302 0.71 0.632503
Target:  5'- gGGCGGgccUGGUGCAAGGcGGGCCugCCGGGCg -3'
miRNA:   3'- -UUGUU---ACUGCGUUUU-CCCGG--GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 69384 0.72 0.611524
Target:  5'- cGGCGGUGGCGCugccGGcGGCCUuugCGGGCc -3'
miRNA:   3'- -UUGUUACUGCGuuu-UC-CCGGG---GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 124930 0.72 0.580195
Target:  5'- cGACAGcgGGCGCGcccuGGGCCCgGcGGCg -3'
miRNA:   3'- -UUGUUa-CUGCGUuuu-CCCGGGgC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 8862 0.73 0.528851
Target:  5'- uGCugcUGGCGCAAuuGGGCCCCaGaGCg -3'
miRNA:   3'- uUGuu-ACUGCGUUuuCCCGGGGcC-CG- -5'
6603 3' -55.1 NC_001847.1 + 8105 0.75 0.413984
Target:  5'- cGACGcgGcgccaGCGCAGGcgcGGGGCCCCagGGGCg -3'
miRNA:   3'- -UUGUuaC-----UGCGUUU---UCCCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 104885 0.76 0.396356
Target:  5'- cAGCGGUGGCgGCGAGcgccccgcGGGGCCCgCGcGGCg -3'
miRNA:   3'- -UUGUUACUG-CGUUU--------UCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 106786 0.76 0.354459
Target:  5'- cGCGAgGGCGCc--GGGGgCCCGGGCg -3'
miRNA:   3'- uUGUUaCUGCGuuuUCCCgGGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.