miRNA display CGI


Results 61 - 80 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 39628 0.71 0.663948
Target:  5'- gGGCAAgccUGGCGCGcccgccaGGCCCaCGGGCg -3'
miRNA:   3'- -UUGUU---ACUGCGUuuuc---CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 115274 0.7 0.72585
Target:  5'- uGGCGGUGGCGggcuaAGccGGcGCCCCcGGGCg -3'
miRNA:   3'- -UUGUUACUGCg----UUuuCC-CGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 134078 0.78 0.308444
Target:  5'- gGACuggGACGCGGAccAGGGCCCgCGGGa -3'
miRNA:   3'- -UUGuuaCUGCGUUU--UCCCGGG-GCCCg -5'
6603 3' -55.1 NC_001847.1 + 134909 0.76 0.362584
Target:  5'- gGGCGucggGGCGCGAGGcccgggcucGGGCCCCcGGGCg -3'
miRNA:   3'- -UUGUua--CUGCGUUUU---------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 20642 0.75 0.40511
Target:  5'- cAGCGA-GGCGcCAAAGGGGCUCagcaGGGCg -3'
miRNA:   3'- -UUGUUaCUGC-GUUUUCCCGGGg---CCCG- -5'
6603 3' -55.1 NC_001847.1 + 70362 0.74 0.479276
Target:  5'- gAACAA-GA-GCGAGGGGGCgCCgGGGCg -3'
miRNA:   3'- -UUGUUaCUgCGUUUUCCCG-GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 102686 0.73 0.539001
Target:  5'- gGGCGG-GGCGgGGGcAGGGCgCCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCgUUU-UCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 35567 0.72 0.601054
Target:  5'- -----cGAcCGCGAcGAGGGCgCCGGGCu -3'
miRNA:   3'- uuguuaCU-GCGUU-UUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 54554 0.71 0.62201
Target:  5'- cGGCGGgggcGGCGCGGAGGacgacGGCCCCgcGGGCu -3'
miRNA:   3'- -UUGUUa---CUGCGUUUUC-----CCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 15015 0.71 0.632503
Target:  5'- cGCGGUGgggccGCGCGAGccgcGGCCgCCGGGCg -3'
miRNA:   3'- uUGUUAC-----UGCGUUUuc--CCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 50270 0.67 0.838361
Target:  5'- cGCug-GGCGCGuacguGGGCCgccuagCCGGGCu -3'
miRNA:   3'- uUGuuaCUGCGUuuu--CCCGG------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 133810 0.68 0.829859
Target:  5'- cGCAG-GGCGCGGcgcuGGGGCUCgGGGa -3'
miRNA:   3'- uUGUUaCUGCGUUu---UCCCGGGgCCCg -5'
6603 3' -55.1 NC_001847.1 + 105083 0.69 0.732914
Target:  5'- cGGCAcgcGGCGgAAGccgccgucggcggcGGGGCCgCCGGGCg -3'
miRNA:   3'- -UUGUua-CUGCgUUU--------------UCCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 103029 0.69 0.74591
Target:  5'- -----cGGCGCccGGGGGCccgagCCCGGGCc -3'
miRNA:   3'- uuguuaCUGCGuuUUCCCG-----GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 61475 0.69 0.775188
Target:  5'- -uCGAUGGCGCGGGccAGGGCgUCCaGGUa -3'
miRNA:   3'- uuGUUACUGCGUUU--UCCCG-GGGcCCG- -5'
6603 3' -55.1 NC_001847.1 + 51373 0.68 0.784691
Target:  5'- uGACGGUGACGCucgcGGaGGCCgCGGucGCg -3'
miRNA:   3'- -UUGUUACUGCGuuu-UC-CCGGgGCC--CG- -5'
6603 3' -55.1 NC_001847.1 + 54521 0.68 0.79405
Target:  5'- gGGCGGUGGgGC---GGGGCCguCCGGGg -3'
miRNA:   3'- -UUGUUACUgCGuuuUCCCGG--GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 63540 0.68 0.803256
Target:  5'- cGCugcUGGCGCcgccuGGGCCggcgCCGGGCg -3'
miRNA:   3'- uUGuu-ACUGCGuuuu-CCCGG----GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 113546 0.68 0.82117
Target:  5'- cAGCGAguuuaggGGgGC---GGGGCCCCGcGGCc -3'
miRNA:   3'- -UUGUUa------CUgCGuuuUCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 13278 0.68 0.827272
Target:  5'- uGCGGUGccggcccugugcgcGCGCuacgcGGGCgCCGGGCu -3'
miRNA:   3'- uUGUUAC--------------UGCGuuuu-CCCGgGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.