miRNA display CGI


Results 81 - 100 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 89707 0.69 0.74591
Target:  5'- -----cGcCGCGAcGGGcGCCCUGGGCu -3'
miRNA:   3'- uuguuaCuGCGUUuUCC-CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 77452 0.69 0.76555
Target:  5'- gAGCAGUcGGCGgGcuGGGGCgggcgCCGGGCg -3'
miRNA:   3'- -UUGUUA-CUGCgUuuUCCCGg----GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 88803 0.69 0.775188
Target:  5'- -cCGAUGcCGCcGAcGcGGCCCgCGGGCg -3'
miRNA:   3'- uuGUUACuGCGuUUuC-CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 130611 0.68 0.784691
Target:  5'- -----aGACGCG--GGGGCCaCCgaGGGCg -3'
miRNA:   3'- uuguuaCUGCGUuuUCCCGG-GG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 89538 0.68 0.79405
Target:  5'- cGGCAGcGACGgguCAGAuuGGCCCgCGGGCc -3'
miRNA:   3'- -UUGUUaCUGC---GUUUucCCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 113546 0.68 0.82117
Target:  5'- cAGCGAguuuaggGGgGC---GGGGCCCCGcGGCc -3'
miRNA:   3'- -UUGUUa------CUgCGuuuUCCCGGGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 13278 0.68 0.827272
Target:  5'- uGCGGUGccggcccugugcgcGCGCuacgcGGGCgCCGGGCu -3'
miRNA:   3'- uUGUUAC--------------UGCGuuuu-CCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 15015 0.71 0.632503
Target:  5'- cGCGGUGgggccGCGCGAGccgcGGCCgCCGGGCg -3'
miRNA:   3'- uUGUUAC-----UGCGUUUuc--CCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 54554 0.71 0.62201
Target:  5'- cGGCGGgggcGGCGCGGAGGacgacGGCCCCgcGGGCu -3'
miRNA:   3'- -UUGUUa---CUGCGUUUUC-----CCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 35567 0.72 0.601054
Target:  5'- -----cGAcCGCGAcGAGGGCgCCGGGCu -3'
miRNA:   3'- uuguuaCU-GCGUU-UUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 35992 0.67 0.854764
Target:  5'- cGCAGccGCGCugcAGGcGGCCgCGGGCg -3'
miRNA:   3'- uUGUUacUGCGuu-UUC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 53355 0.67 0.862651
Target:  5'- -----cGACGCGcugcuGGcGGCCgCGGGCa -3'
miRNA:   3'- uuguuaCUGCGUuu---UC-CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 49048 0.67 0.870319
Target:  5'- --uGGUGGCGCGcagcucacGGCCgCGGGCg -3'
miRNA:   3'- uugUUACUGCGUuuuc----CCGGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 86583 0.66 0.877029
Target:  5'- aGACGGcGGCGCuucguucuuuacgcGGCUCCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCGuuuuc---------CCGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 60122 0.66 0.877763
Target:  5'- cGCGgcGUGA-GCGAGGGGGCgUCGGcGCc -3'
miRNA:   3'- uUGU--UACUgCGUUUUCCCGgGGCC-CG- -5'
6603 3' -55.1 NC_001847.1 + 134078 0.78 0.308444
Target:  5'- gGACuggGACGCGGAccAGGGCCCgCGGGa -3'
miRNA:   3'- -UUGuuaCUGCGUUU--UCCCGGG-GCCCg -5'
6603 3' -55.1 NC_001847.1 + 134909 0.76 0.362584
Target:  5'- gGGCGucggGGCGCGAGGcccgggcucGGGCCCCcGGGCg -3'
miRNA:   3'- -UUGUua--CUGCGUUUU---------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 20642 0.75 0.40511
Target:  5'- cAGCGA-GGCGcCAAAGGGGCUCagcaGGGCg -3'
miRNA:   3'- -UUGUUaCUGC-GUUUUCCCGGGg---CCCG- -5'
6603 3' -55.1 NC_001847.1 + 70362 0.74 0.479276
Target:  5'- gAACAA-GA-GCGAGGGGGCgCCgGGGCg -3'
miRNA:   3'- -UUGUUaCUgCGUUUUCCCG-GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 102686 0.73 0.539001
Target:  5'- gGGCGG-GGCGgGGGcAGGGCgCCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCgUUU-UCCCGgGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.