miRNA display CGI


Results 101 - 120 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 134857 0.67 0.870319
Target:  5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3'
miRNA:   3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 19489 0.66 0.877763
Target:  5'- cGCAcgGACGCGAAcauGGauGGUCCCGGu- -3'
miRNA:   3'- uUGUuaCUGCGUUU---UC--CCGGGGCCcg -5'
6603 3' -55.1 NC_001847.1 + 127143 0.66 0.882837
Target:  5'- cGCGcgGGgGCGAuguccaaguggaggGGGGGCCCgagcaGGGCc -3'
miRNA:   3'- uUGUuaCUgCGUU--------------UUCCCGGGg----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 65741 0.66 0.884977
Target:  5'- -----cGGCGCucGAGAGcgugguGGCCCgCGGGCg -3'
miRNA:   3'- uuguuaCUGCG--UUUUC------CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 135128 0.66 0.884977
Target:  5'- -cCGggGuCGC-AGGGGGCCCgCGcGGCg -3'
miRNA:   3'- uuGUuaCuGCGuUUUCCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 130611 0.68 0.784691
Target:  5'- -----aGACGCG--GGGGCCaCCgaGGGCg -3'
miRNA:   3'- uuguuaCUGCGUuuUCCCGG-GG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 88803 0.69 0.775188
Target:  5'- -cCGAUGcCGCcGAcGcGGCCCgCGGGCg -3'
miRNA:   3'- uuGUUACuGCGuUUuC-CCGGG-GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 134078 0.78 0.308444
Target:  5'- gGACuggGACGCGGAccAGGGCCCgCGGGa -3'
miRNA:   3'- -UUGuuaCUGCGUUU--UCCCGGG-GCCCg -5'
6603 3' -55.1 NC_001847.1 + 134909 0.76 0.362584
Target:  5'- gGGCGucggGGCGCGAGGcccgggcucGGGCCCCcGGGCg -3'
miRNA:   3'- -UUGUua--CUGCGUUUU---------CCCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 20642 0.75 0.40511
Target:  5'- cAGCGA-GGCGcCAAAGGGGCUCagcaGGGCg -3'
miRNA:   3'- -UUGUUaCUGC-GUUUUCCCGGGg---CCCG- -5'
6603 3' -55.1 NC_001847.1 + 70362 0.74 0.479276
Target:  5'- gAACAA-GA-GCGAGGGGGCgCCgGGGCg -3'
miRNA:   3'- -UUGUUaCUgCGUUUUCCCG-GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 102686 0.73 0.539001
Target:  5'- gGGCGG-GGCGgGGGcAGGGCgCCGGGCg -3'
miRNA:   3'- -UUGUUaCUGCgUUU-UCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 35567 0.72 0.601054
Target:  5'- -----cGAcCGCGAcGAGGGCgCCGGGCu -3'
miRNA:   3'- uuguuaCU-GCGUU-UUCCCGgGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 54554 0.71 0.62201
Target:  5'- cGGCGGgggcGGCGCGGAGGacgacGGCCCCgcGGGCu -3'
miRNA:   3'- -UUGUUa---CUGCGUUUUC-----CCGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 15015 0.71 0.632503
Target:  5'- cGCGGUGgggccGCGCGAGccgcGGCCgCCGGGCg -3'
miRNA:   3'- uUGUUAC-----UGCGUUUuc--CCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 114894 0.7 0.674388
Target:  5'- uAGCAcAUGGCGCGcgcGGGGGcgaGCCCCugGGGCa -3'
miRNA:   3'- -UUGU-UACUGCGU---UUUCC---CGGGG--CCCG- -5'
6603 3' -55.1 NC_001847.1 + 72029 0.7 0.72585
Target:  5'- cGACccGUG-CGCGGcGGcGGCCCCGGGg -3'
miRNA:   3'- -UUGu-UACuGCGUUuUC-CCGGGGCCCg -5'
6603 3' -55.1 NC_001847.1 + 103219 0.7 0.72585
Target:  5'- -----cGAC-CGAgaccGAGGGCCCgGGGCg -3'
miRNA:   3'- uuguuaCUGcGUU----UUCCCGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 89707 0.69 0.74591
Target:  5'- -----cGcCGCGAcGGGcGCCCUGGGCu -3'
miRNA:   3'- uuguuaCuGCGUUuUCC-CGGGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 77452 0.69 0.76555
Target:  5'- gAGCAGUcGGCGgGcuGGGGCgggcgCCGGGCg -3'
miRNA:   3'- -UUGUUA-CUGCgUuuUCCCGg----GGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.