Results 21 - 40 of 278 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6603 | 3' | -55.1 | NC_001847.1 | + | 95751 | 0.66 | 0.877763 |
Target: 5'- cGCucUGGCGCGGGGGGcGgCgCGGGCn -3' miRNA: 3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 32215 | 0.66 | 0.880676 |
Target: 5'- gGGCGGggccggGGCGCGGggcgccggacccAGGGGCggagcccagagcgggCCCGGGCc -3' miRNA: 3'- -UUGUUa-----CUGCGUU------------UUCCCG---------------GGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 21560 | 0.66 | 0.896027 |
Target: 5'- uGACAAgggccggggagagGGCGggaGAGGGGGCCgCgGGGCc -3' miRNA: 3'- -UUGUUa------------CUGCg--UUUUCCCGG-GgCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 72204 | 0.66 | 0.905188 |
Target: 5'- uACuccgGGuCGCGGAggcAGGGCacgCCCGGGCc -3' miRNA: 3'- uUGuua-CU-GCGUUU---UCCCG---GGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 1532 | 0.66 | 0.905188 |
Target: 5'- -----cGGCGCGcgcGAAGGcGCCC-GGGCc -3' miRNA: 3'- uuguuaCUGCGU---UUUCC-CGGGgCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 31384 | 0.66 | 0.905188 |
Target: 5'- -----cGGCGCAGucGu-CCCCGGGCg -3' miRNA: 3'- uuguuaCUGCGUUuuCccGGGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 46219 | 0.66 | 0.907717 |
Target: 5'- cGCGcAUGGCGCAGAgccgcgcgcgcgcaaGGGagccGCCCCcGGCg -3' miRNA: 3'- uUGU-UACUGCGUUU---------------UCC----CGGGGcCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 42722 | 0.66 | 0.905188 |
Target: 5'- ----uUGGCGCGGcGGGcGGCCgCgCGGGCg -3' miRNA: 3'- uuguuACUGCGUU-UUC-CCGG-G-GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 17706 | 0.66 | 0.911437 |
Target: 5'- cGCcAUGuC-CAAGAGGGCCa-GGGCg -3' miRNA: 3'- uUGuUACuGcGUUUUCCCGGggCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 73009 | 0.66 | 0.911437 |
Target: 5'- cAGCGcgGGCGCGGAAccaGGCCgCGGcaGCg -3' miRNA: 3'- -UUGUuaCUGCGUUUUc--CCGGgGCC--CG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 53640 | 0.66 | 0.891955 |
Target: 5'- cGCGuccGCGaCAAAGaccGGGCaCCCGGGCc -3' miRNA: 3'- uUGUuacUGC-GUUUU---CCCG-GGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 109372 | 0.66 | 0.891955 |
Target: 5'- cGCGGaaugGGCGCAGcuGGGCUgCGGuGCc -3' miRNA: 3'- uUGUUa---CUGCGUUuuCCCGGgGCC-CG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 24330 | 0.66 | 0.882837 |
Target: 5'- cGCGcgGGgGCGAuguccaaguggaggGGGGGCCCgagcaGGGCc -3' miRNA: 3'- uUGUuaCUgCGUU--------------UUCCCGGGg----CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 132451 | 0.66 | 0.884266 |
Target: 5'- cGCAAgcuggagGGCGCGGAGGacgagccgaugccGGCCgagccgCCGGGCg -3' miRNA: 3'- uUGUUa------CUGCGUUUUC-------------CCGG------GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 28345 | 0.66 | 0.884977 |
Target: 5'- cGCGggGccGCGCGcccGGGCCCCcGGCg -3' miRNA: 3'- uUGUuaC--UGCGUuuuCCCGGGGcCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 32315 | 0.66 | 0.884977 |
Target: 5'- -cCGggGuCGC-AGGGGGCCCgCGcGGCg -3' miRNA: 3'- uuGUuaCuGCGuUUUCCCGGG-GC-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 77255 | 0.66 | 0.884977 |
Target: 5'- -----cGGgGCGGuuGcGCCCCGGGCg -3' miRNA: 3'- uuguuaCUgCGUUuuCcCGGGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 56326 | 0.66 | 0.891268 |
Target: 5'- cGCGAaGGCcguaaagGCGAAGGGGUCCacaugcuccgCGGGCg -3' miRNA: 3'- uUGUUaCUG-------CGUUUUCCCGGG----------GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 70 | 0.66 | 0.891955 |
Target: 5'- -----cGGCGCGGc-GGGCCC-GGGCc -3' miRNA: 3'- uuguuaCUGCGUUuuCCCGGGgCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 52892 | 0.66 | 0.891955 |
Target: 5'- aGGCGAUGGC-CAGuccuaGGUCCgCGGGCa -3' miRNA: 3'- -UUGUUACUGcGUUuuc--CCGGG-GCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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