miRNA display CGI


Results 61 - 80 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 3' -55.1 NC_001847.1 + 32215 0.66 0.880676
Target:  5'- gGGCGGggccggGGCGCGGggcgccggacccAGGGGCggagcccagagcgggCCCGGGCc -3'
miRNA:   3'- -UUGUUa-----CUGCGUU------------UUCCCG---------------GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95751 0.66 0.877763
Target:  5'- cGCucUGGCGCGGGGGGcGgCgCGGGCn -3'
miRNA:   3'- uUGuuACUGCGUUUUCC-CgGgGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 116044 0.67 0.862651
Target:  5'- cGCAcuuuGUGACgGCAGccucGGGCaCCgGGGCg -3'
miRNA:   3'- uUGU----UACUG-CGUUuu--CCCG-GGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 87577 0.67 0.862651
Target:  5'- -----cGGCGCGugcGcGGCCgCCGGGCu -3'
miRNA:   3'- uuguuaCUGCGUuuuC-CCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 28559 0.67 0.862651
Target:  5'- cGGCGcgGGCGaCAcccgcGAGGGCCuCUGGGa -3'
miRNA:   3'- -UUGUuaCUGC-GUu----UUCCCGG-GGCCCg -5'
6603 3' -55.1 NC_001847.1 + 16832 0.67 0.862651
Target:  5'- -uCGGUGGCGCGGGcaucGGGGCggcgCUCGaGGCg -3'
miRNA:   3'- uuGUUACUGCGUUU----UCCCG----GGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 14457 0.67 0.862651
Target:  5'- uGCGcgGcCGCGGccucuGGGUCuCCGGGCu -3'
miRNA:   3'- uUGUuaCuGCGUUuu---CCCGG-GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 44600 0.67 0.862651
Target:  5'- ------cGCGCGGcGAGGGCCgCCaGGGCg -3'
miRNA:   3'- uuguuacUGCGUU-UUCCCGG-GG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 22383 0.67 0.862651
Target:  5'- -----cGGgGCAGAAGGcGCCC-GGGCc -3'
miRNA:   3'- uuguuaCUgCGUUUUCC-CGGGgCCCG- -5'
6603 3' -55.1 NC_001847.1 + 95261 0.67 0.854764
Target:  5'- cGCGAUcgggGGCGCGAucGGGGGCgCCGGcaaGCu -3'
miRNA:   3'- uUGUUA----CUGCGUU--UUCCCGgGGCC---CG- -5'
6603 3' -55.1 NC_001847.1 + 72807 0.67 0.869563
Target:  5'- cGCucuuuGUGGCgGCAucGGGGCCauggcgcUCGGGCg -3'
miRNA:   3'- uUGu----UACUG-CGUuuUCCCGG-------GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 12302 0.67 0.870319
Target:  5'- cACAAgccagGGCGC----GGGCCCggUGGGCg -3'
miRNA:   3'- uUGUUa----CUGCGuuuuCCCGGG--GCCCG- -5'
6603 3' -55.1 NC_001847.1 + 43117 0.66 0.877763
Target:  5'- -cCGAUGACGUGGAGcGGCuCUCGcGGCu -3'
miRNA:   3'- uuGUUACUGCGUUUUcCCG-GGGC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 41872 0.66 0.877763
Target:  5'- cGACAucgcGGCGCGAuacGGCCCgCGcGGCg -3'
miRNA:   3'- -UUGUua--CUGCGUUuucCCGGG-GC-CCG- -5'
6603 3' -55.1 NC_001847.1 + 123579 0.66 0.877763
Target:  5'- -----cGcCGCGAGcGGGGCCggaCCGGGCu -3'
miRNA:   3'- uuguuaCuGCGUUU-UCCCGG---GGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 13308 0.66 0.877763
Target:  5'- cGCGGUcgucGAgGCAGAcGGGCUCCggcacGGGCg -3'
miRNA:   3'- uUGUUA----CUgCGUUUuCCCGGGG-----CCCG- -5'
6603 3' -55.1 NC_001847.1 + 32170 0.66 0.877029
Target:  5'- -cCAA-GACGCAGAAccccGGCCCCccggccgGGGCc -3'
miRNA:   3'- uuGUUaCUGCGUUUUc---CCGGGG-------CCCG- -5'
6603 3' -55.1 NC_001847.1 + 76728 0.67 0.870319
Target:  5'- gGACGGUcgGGCGgGGAAggacggucGGGCgCUCGGGCg -3'
miRNA:   3'- -UUGUUA--CUGCgUUUU--------CCCG-GGGCCCG- -5'
6603 3' -55.1 NC_001847.1 + 32044 0.67 0.870319
Target:  5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3'
miRNA:   3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5'
6603 3' -55.1 NC_001847.1 + 91997 0.67 0.870319
Target:  5'- cAGCGAcugcgGGCGCAGcgcccgcGGGCCCgcgccgucugCGGGCa -3'
miRNA:   3'- -UUGUUa----CUGCGUUuu-----CCCGGG----------GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.