Results 81 - 100 of 278 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6603 | 3' | -55.1 | NC_001847.1 | + | 123207 | 0.67 | 0.854764 |
Target: 5'- cGGCGuccAUGGCGUcuAAGGGCgCCuagaaagccgCGGGCg -3' miRNA: 3'- -UUGU---UACUGCGuuUUCCCG-GG----------GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 38548 | 0.67 | 0.854764 |
Target: 5'- uAAUggUGACGUGGAugucucgccGGGCgCCCaGGCa -3' miRNA: 3'- -UUGuuACUGCGUUUu--------CCCG-GGGcCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 27444 | 0.67 | 0.854764 |
Target: 5'- cGCAGcGGCGCG--GGGGCCCUGccGCu -3' miRNA: 3'- uUGUUaCUGCGUuuUCCCGGGGCc-CG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 116158 | 0.67 | 0.854764 |
Target: 5'- -----aGGCGCu--GGcGGCCgCGGGCg -3' miRNA: 3'- uuguuaCUGCGuuuUC-CCGGgGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 24086 | 0.67 | 0.854764 |
Target: 5'- gGGCAcgGuCGUGAGAgcuggcgcGGGUCCCaGGGCu -3' miRNA: 3'- -UUGUuaCuGCGUUUU--------CCCGGGG-CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 43643 | 0.67 | 0.846664 |
Target: 5'- uGCAG-GACGCGcgcGAGGGCU-CGGGUg -3' miRNA: 3'- uUGUUaCUGCGUu--UUCCCGGgGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 37019 | 0.67 | 0.846664 |
Target: 5'- cACcGUG-CGgAGcGGGGCgCCGGGCu -3' miRNA: 3'- uUGuUACuGCgUUuUCCCGgGGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 95261 | 0.67 | 0.854764 |
Target: 5'- cGCGAUcgggGGCGCGAucGGGGGCgCCGGcaaGCu -3' miRNA: 3'- uUGUUA----CUGCGUU--UUCCCGgGGCC---CG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 22383 | 0.67 | 0.862651 |
Target: 5'- -----cGGgGCAGAAGGcGCCC-GGGCc -3' miRNA: 3'- uuguuaCUgCGUUUUCC-CGGGgCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 44600 | 0.67 | 0.862651 |
Target: 5'- ------cGCGCGGcGAGGGCCgCCaGGGCg -3' miRNA: 3'- uuguuacUGCGUU-UUCCCGG-GG-CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 32044 | 0.67 | 0.870319 |
Target: 5'- gGACGGcGcccGCGCGGGcucGGcGGCCCCcGGGCu -3' miRNA: 3'- -UUGUUaC---UGCGUUU---UC-CCGGGG-CCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 91997 | 0.67 | 0.870319 |
Target: 5'- cAGCGAcugcgGGCGCAGcgcccgcGGGCCCgcgccgucugCGGGCa -3' miRNA: 3'- -UUGUUa----CUGCGUUuu-----CCCGGG----------GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 12302 | 0.67 | 0.870319 |
Target: 5'- cACAAgccagGGCGC----GGGCCCggUGGGCg -3' miRNA: 3'- uUGUUa----CUGCGuuuuCCCGGG--GCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 72807 | 0.67 | 0.869563 |
Target: 5'- cGCucuuuGUGGCgGCAucGGGGCCauggcgcUCGGGCg -3' miRNA: 3'- uUGu----UACUG-CGUuuUCCCGG-------GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 116044 | 0.67 | 0.862651 |
Target: 5'- cGCAcuuuGUGACgGCAGccucGGGCaCCgGGGCg -3' miRNA: 3'- uUGU----UACUG-CGUUuu--CCCG-GGgCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 87577 | 0.67 | 0.862651 |
Target: 5'- -----cGGCGCGugcGcGGCCgCCGGGCu -3' miRNA: 3'- uuguuaCUGCGUuuuC-CCGG-GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 28559 | 0.67 | 0.862651 |
Target: 5'- cGGCGcgGGCGaCAcccgcGAGGGCCuCUGGGa -3' miRNA: 3'- -UUGUuaCUGC-GUu----UUCCCGG-GGCCCg -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 16832 | 0.67 | 0.862651 |
Target: 5'- -uCGGUGGCGCGGGcaucGGGGCggcgCUCGaGGCg -3' miRNA: 3'- uuGUUACUGCGUUU----UCCCG----GGGC-CCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 14457 | 0.67 | 0.862651 |
Target: 5'- uGCGcgGcCGCGGccucuGGGUCuCCGGGCu -3' miRNA: 3'- uUGUuaCuGCGUUuu---CCCGG-GGCCCG- -5' |
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6603 | 3' | -55.1 | NC_001847.1 | + | 32784 | 0.67 | 0.846664 |
Target: 5'- ----cUGugGgGGGAGGGCCggGGGCg -3' miRNA: 3'- uuguuACugCgUUUUCCCGGggCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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