miRNA display CGI


Results 1 - 20 of 744 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 5' -60.3 NC_001847.1 + 103503 0.66 0.712339
Target:  5'- --cUCCGGgccCGCCgaaacaaagUGCacuagCGCGcCCGCCCa -3'
miRNA:   3'- uuuAGGCC---GCGG---------AUGa----GCGC-GGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 16493 0.66 0.712339
Target:  5'- --cUCUuGCGCCUcCcgCGCGCgGCCUg -3'
miRNA:   3'- uuuAGGcCGCGGAuGa-GCGCGgCGGG- -5'
6603 5' -60.3 NC_001847.1 + 94396 0.66 0.712339
Target:  5'- cGAUUCGGCGCagUAC-CGCGacggggccaUGCCCg -3'
miRNA:   3'- uUUAGGCCGCGg-AUGaGCGCg--------GCGGG- -5'
6603 5' -60.3 NC_001847.1 + 116108 0.66 0.712339
Target:  5'- cGAcgCCGG-GCCUGCcggcggggucacgCgcgaagaggccgaggGCGCCGCCCg -3'
miRNA:   3'- -UUuaGGCCgCGGAUGa------------G---------------CGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 64072 0.66 0.712339
Target:  5'- ---gCCGGcCGCCU-----CGCCGCCCu -3'
miRNA:   3'- uuuaGGCC-GCGGAugagcGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 77149 0.66 0.712339
Target:  5'- ---gCCGcCGCCUGCgccgccacCGCGCCgGUCCu -3'
miRNA:   3'- uuuaGGCcGCGGAUGa-------GCGCGG-CGGG- -5'
6603 5' -60.3 NC_001847.1 + 103810 0.66 0.712339
Target:  5'- ---gCCGGCGgCggcacgcGCUCcaccaggcCGCCGCCCg -3'
miRNA:   3'- uuuaGGCCGCgGa------UGAGc-------GCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 106725 0.66 0.712339
Target:  5'- cAGcgCgGGCGCCgg-UUGCGC-GCCCg -3'
miRNA:   3'- -UUuaGgCCGCGGaugAGCGCGgCGGG- -5'
6603 5' -60.3 NC_001847.1 + 5875 0.66 0.712339
Target:  5'- uGGUCCaGCGCUgcgcgcaggGCggcCGCGCCGUCg -3'
miRNA:   3'- uUUAGGcCGCGGa--------UGa--GCGCGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 120996 0.66 0.712339
Target:  5'- ---nCCGGcCGCC-GCUgCGCaGCCGgCCg -3'
miRNA:   3'- uuuaGGCC-GCGGaUGA-GCG-CGGCgGG- -5'
6603 5' -60.3 NC_001847.1 + 3912 0.66 0.712339
Target:  5'- cAGcgCgGGCGCCgg-UUGCGC-GCCCg -3'
miRNA:   3'- -UUuaGgCCGCGGaugAGCGCGgCGGG- -5'
6603 5' -60.3 NC_001847.1 + 42403 0.66 0.712339
Target:  5'- gAGGUCCuG-GCCUGCcaCGCGCUGCgCg -3'
miRNA:   3'- -UUUAGGcCgCGGAUGa-GCGCGGCGgG- -5'
6603 5' -60.3 NC_001847.1 + 81387 0.66 0.712339
Target:  5'- ---cUCGGUGCgcACUCGCaGCUGCCg -3'
miRNA:   3'- uuuaGGCCGCGgaUGAGCG-CGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 57686 0.66 0.712339
Target:  5'- ---cCCGGCGCCcGCcccaGC-CCGCCg -3'
miRNA:   3'- uuuaGGCCGCGGaUGag--CGcGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 57542 0.66 0.712339
Target:  5'- ----gCGGCGCCgccagaaACggGUGCCGCCg -3'
miRNA:   3'- uuuagGCCGCGGa------UGagCGCGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 56430 0.66 0.712339
Target:  5'- -cGUCgCGGaagacCGCCcgcACUCGCguGCUGCCCg -3'
miRNA:   3'- uuUAG-GCC-----GCGGa--UGAGCG--CGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 52546 0.66 0.712339
Target:  5'- ----gCGGCGC--ACagGCGCCGCCg -3'
miRNA:   3'- uuuagGCCGCGgaUGagCGCGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 105433 0.66 0.712339
Target:  5'- --cUCCcGCGCCgcaguCUCGCGCCcaagcgaucagcGCCa -3'
miRNA:   3'- uuuAGGcCGCGGau---GAGCGCGG------------CGGg -5'
6603 5' -60.3 NC_001847.1 + 102277 0.66 0.712339
Target:  5'- --cUCCaGCGCCaggauCUCGCGCgcgagCGCCg -3'
miRNA:   3'- uuuAGGcCGCGGau---GAGCGCG-----GCGGg -5'
6603 5' -60.3 NC_001847.1 + 64615 0.66 0.712339
Target:  5'- ---gCCaGCGCCaGCa--CGCCGCCCa -3'
miRNA:   3'- uuuaGGcCGCGGaUGagcGCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.