miRNA display CGI


Results 21 - 40 of 744 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 5' -60.3 NC_001847.1 + 102277 0.66 0.712339
Target:  5'- --cUCCaGCGCCaggauCUCGCGCgcgagCGCCg -3'
miRNA:   3'- uuuAGGcCGCGGau---GAGCGCG-----GCGGg -5'
6603 5' -60.3 NC_001847.1 + 115491 0.66 0.708411
Target:  5'- --uUCCGGCgGCCgggcccgcaagcgGCcgCGCGCCGaCgCCg -3'
miRNA:   3'- uuuAGGCCG-CGGa------------UGa-GCGCGGC-G-GG- -5'
6603 5' -60.3 NC_001847.1 + 31716 0.66 0.7025
Target:  5'- -----aGGCGCggGCcgCGCGCCGCUg -3'
miRNA:   3'- uuuaggCCGCGgaUGa-GCGCGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 79299 0.66 0.7025
Target:  5'- ----aCGGCGCCgGCUgGCaGCUGCgCg -3'
miRNA:   3'- uuuagGCCGCGGaUGAgCG-CGGCGgG- -5'
6603 5' -60.3 NC_001847.1 + 62357 0.66 0.7025
Target:  5'- gAGcgCCGaaauuuCGCCcagGCacgcCGCGCCGCCCg -3'
miRNA:   3'- -UUuaGGCc-----GCGGa--UGa---GCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 66292 0.66 0.7025
Target:  5'- cGAGUa-GGCGCCggauuuaACUCaGCGCCcgggGCCCu -3'
miRNA:   3'- -UUUAggCCGCGGa------UGAG-CGCGG----CGGG- -5'
6603 5' -60.3 NC_001847.1 + 50272 0.66 0.7025
Target:  5'- ---cUgGGCGCgUACgUGgGCCGCCUa -3'
miRNA:   3'- uuuaGgCCGCGgAUGaGCgCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 68638 0.66 0.7025
Target:  5'- ---gCgGcGCGCCUccAC-CGCGCCGCUg -3'
miRNA:   3'- uuuaGgC-CGCGGA--UGaGCGCGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 71184 0.66 0.7025
Target:  5'- --uUCCuGGaCGCCUggcACgCGCuGCUGCCCc -3'
miRNA:   3'- uuuAGG-CC-GCGGA---UGaGCG-CGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 36346 0.66 0.7025
Target:  5'- ---gCCGcGCGCCgcgGCgcgcgcacgCgGCGCCGCCg -3'
miRNA:   3'- uuuaGGC-CGCGGa--UGa--------G-CGCGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 30612 0.66 0.7025
Target:  5'- ---cCCGGgGCCgccGCgcaGCGCCGCa- -3'
miRNA:   3'- uuuaGGCCgCGGa--UGag-CGCGGCGgg -5'
6603 5' -60.3 NC_001847.1 + 11975 0.66 0.7025
Target:  5'- ---gCUGaGCGCC-GC-CGCGCCGUCUc -3'
miRNA:   3'- uuuaGGC-CGCGGaUGaGCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 14524 0.66 0.7025
Target:  5'- -cGUCuCGGCGgC-GCUCGCugcccgcgguGCCGCCg -3'
miRNA:   3'- uuUAG-GCCGCgGaUGAGCG----------CGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 113618 0.66 0.7025
Target:  5'- --cUUgGGCGCgUugGCcCGCGCgGCCCc -3'
miRNA:   3'- uuuAGgCCGCGgA--UGaGCGCGgCGGG- -5'
6603 5' -60.3 NC_001847.1 + 112092 0.66 0.7025
Target:  5'- cGGUCCGGCGCaagguggACUggcucgagcggCGCGUgGCCg -3'
miRNA:   3'- uUUAGGCCGCGga-----UGA-----------GCGCGgCGGg -5'
6603 5' -60.3 NC_001847.1 + 14445 0.66 0.7025
Target:  5'- ----aCGGCGCCggggUGCGCgGCCg -3'
miRNA:   3'- uuuagGCCGCGGaugaGCGCGgCGGg -5'
6603 5' -60.3 NC_001847.1 + 132096 0.66 0.7025
Target:  5'- ---aCCuGCGCCUGCggcugcugggCGCGCagacgugacCGCCCc -3'
miRNA:   3'- uuuaGGcCGCGGAUGa---------GCGCG---------GCGGG- -5'
6603 5' -60.3 NC_001847.1 + 114941 0.66 0.7025
Target:  5'- -cGUuuGGCGgg-GCgggGCGCCGCCCc -3'
miRNA:   3'- uuUAggCCGCggaUGag-CGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 83459 0.66 0.7025
Target:  5'- ----aCGGCGCgCgacgGCgcgCGCguacGCCGCCCu -3'
miRNA:   3'- uuuagGCCGCG-Ga---UGa--GCG----CGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 134529 0.66 0.7025
Target:  5'- -----aGGCGCggGCcgCGCGCCGCUg -3'
miRNA:   3'- uuuaggCCGCGgaUGa-GCGCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.