miRNA display CGI


Results 1 - 20 of 744 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 5' -60.3 NC_001847.1 + 108 0.76 0.189741
Target:  5'- uGGGUCCGGCGCCc---CGCGCCccgGCCCc -3'
miRNA:   3'- -UUUAGGCCGCGGaugaGCGCGG---CGGG- -5'
6603 5' -60.3 NC_001847.1 + 214 0.7 0.425523
Target:  5'- ---cCCGGCGCCcggGggcccgagcccgggcCUCGCGCCccgacGCCCg -3'
miRNA:   3'- uuuaGGCCGCGGa--U---------------GAGCGCGG-----CGGG- -5'
6603 5' -60.3 NC_001847.1 + 366 0.7 0.422047
Target:  5'- ---cCCGGgGCCcGCcccgCGCGCCGCgCg -3'
miRNA:   3'- uuuaGGCCgCGGaUGa---GCGCGGCGgG- -5'
6603 5' -60.3 NC_001847.1 + 500 0.68 0.572346
Target:  5'- --cUCC-GCGCCUGCUgccgGC-CCGCCCc -3'
miRNA:   3'- uuuAGGcCGCGGAUGAg---CGcGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 581 0.7 0.422047
Target:  5'- --cUCCGGCGCCggguccugGCccucCGCGgCCGCuCCg -3'
miRNA:   3'- uuuAGGCCGCGGa-------UGa---GCGC-GGCG-GG- -5'
6603 5' -60.3 NC_001847.1 + 782 0.71 0.404922
Target:  5'- ----gCGGCGCCggcCUCGuCGUCGUCCg -3'
miRNA:   3'- uuuagGCCGCGGau-GAGC-GCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 894 0.68 0.542736
Target:  5'- ---gCCGGgGCCgccgcgGC-CGCcggccGCCGCCCg -3'
miRNA:   3'- uuuaGGCCgCGGa-----UGaGCG-----CGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 973 0.68 0.582306
Target:  5'- ---gCCgGGCGUCUA--UGCGCCgGCCCg -3'
miRNA:   3'- uuuaGG-CCGCGGAUgaGCGCGG-CGGG- -5'
6603 5' -60.3 NC_001847.1 + 1084 0.67 0.622425
Target:  5'- cAGUCCacgccgGGCGCCgcggccgcggGCg-GCGCCGCCg -3'
miRNA:   3'- uUUAGG------CCGCGGa---------UGagCGCGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 1142 0.68 0.552555
Target:  5'- ----gCGGCGCCUcggCGCGCgGCuCCg -3'
miRNA:   3'- uuuagGCCGCGGAugaGCGCGgCG-GG- -5'
6603 5' -60.3 NC_001847.1 + 1181 0.67 0.642556
Target:  5'- ---cCCGGCGCCUuauCUCGCuauagcuCCGUgCg -3'
miRNA:   3'- uuuaGGCCGCGGAu--GAGCGc------GGCGgG- -5'
6603 5' -60.3 NC_001847.1 + 1208 0.82 0.07757
Target:  5'- -cGUCgGGCGCCaGCUccagcgCGCGCCGCCCg -3'
miRNA:   3'- uuUAGgCCGCGGaUGA------GCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 1320 0.67 0.642556
Target:  5'- gAAGUCCGGCuCCccgaGCcccaGCGCCGCgCCc -3'
miRNA:   3'- -UUUAGGCCGcGGa---UGag--CGCGGCG-GG- -5'
6603 5' -60.3 NC_001847.1 + 1529 0.74 0.259396
Target:  5'- ---cCCGcGCGC--GCUUGUGCCGCCCa -3'
miRNA:   3'- uuuaGGC-CGCGgaUGAGCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 1579 0.69 0.494615
Target:  5'- ----aCGGCGCgcGCcagCGCGCCGCUCg -3'
miRNA:   3'- uuuagGCCGCGgaUGa--GCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 1647 0.67 0.616389
Target:  5'- cAGGUacaCGuGCGCCUGCccgacggccgggccgUCGCGCgGCCa -3'
miRNA:   3'- -UUUAg--GC-CGCGGAUG---------------AGCGCGgCGGg -5'
6603 5' -60.3 NC_001847.1 + 1832 0.68 0.582306
Target:  5'- -cGUCCGGCGCgCccguccaGCGCCcgGCCCa -3'
miRNA:   3'- uuUAGGCCGCG-Gaugag--CGCGG--CGGG- -5'
6603 5' -60.3 NC_001847.1 + 1934 0.71 0.41343
Target:  5'- ----gCGGCgGCC-ACUCGgGCCGCCg -3'
miRNA:   3'- uuuagGCCG-CGGaUGAGCgCGGCGGg -5'
6603 5' -60.3 NC_001847.1 + 2166 0.66 0.692603
Target:  5'- cAGGUCuCGcaGCGCC----CGCGCCGCCUg -3'
miRNA:   3'- -UUUAG-GC--CGCGGaugaGCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 2341 0.67 0.612367
Target:  5'- ----gCGGCGgCUcccGC-CGCGCCgGCCCg -3'
miRNA:   3'- uuuagGCCGCgGA---UGaGCGCGG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.