miRNA display CGI


Results 1 - 20 of 744 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6603 5' -60.3 NC_001847.1 + 68861 0.99 0.005078
Target:  5'- ---aUCGGCGCCUACUCGCGCCGCCCg -3'
miRNA:   3'- uuuaGGCCGCGGAUGAGCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 82695 0.75 0.230405
Target:  5'- uGAGUCgGGCGCC-GCUCGCGaagcggGCCCg -3'
miRNA:   3'- -UUUAGgCCGCGGaUGAGCGCgg----CGGG- -5'
6603 5' -60.3 NC_001847.1 + 4938 0.75 0.235976
Target:  5'- --uUCCcGCGCC--CUcCGCGCCGCCCg -3'
miRNA:   3'- uuuAGGcCGCGGauGA-GCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 120996 0.66 0.712339
Target:  5'- ---nCCGGcCGCC-GCUgCGCaGCCGgCCg -3'
miRNA:   3'- uuuaGGCC-GCGGaUGA-GCG-CGGCgGG- -5'
6603 5' -60.3 NC_001847.1 + 121801 0.78 0.144195
Target:  5'- -cGUCCucgcgGGCGCCUGCU--CGCCGCCCg -3'
miRNA:   3'- uuUAGG-----CCGCGGAUGAgcGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 77617 0.78 0.151658
Target:  5'- ----gCGGCGCCgcuggGCgaggacggCGCGCCGCCCg -3'
miRNA:   3'- uuuagGCCGCGGa----UGa-------GCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 34523 0.77 0.159471
Target:  5'- ----aCGGCGCCgGCgauGCGCCGCCCg -3'
miRNA:   3'- uuuagGCCGCGGaUGag-CGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 78773 0.77 0.176193
Target:  5'- ---cCCGaGCGCCgaGgUCGUGCCGCCCg -3'
miRNA:   3'- uuuaGGC-CGCGGa-UgAGCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 46899 0.76 0.194456
Target:  5'- ---cCCGGCGCCcGCgcCGCGCCGgCCu -3'
miRNA:   3'- uuuaGGCCGCGGaUGa-GCGCGGCgGG- -5'
6603 5' -60.3 NC_001847.1 + 121039 0.75 0.214355
Target:  5'- --uUCCGGCGCCaACUgGCGUCGaUCCu -3'
miRNA:   3'- uuuAGGCCGCGGaUGAgCGCGGC-GGG- -5'
6603 5' -60.3 NC_001847.1 + 82107 0.76 0.209222
Target:  5'- -----gGGCGCCUGCguuugCGCcuGCCGCCCg -3'
miRNA:   3'- uuuaggCCGCGGAUGa----GCG--CGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 126693 0.76 0.19398
Target:  5'- ---cCCGGCGCCgcCUCcgacccgGCGCCGCCUc -3'
miRNA:   3'- uuuaGGCCGCGGauGAG-------CGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 104021 0.82 0.07757
Target:  5'- -cGUCgGGCGCCaGCUccagcgCGCGCCGCCCg -3'
miRNA:   3'- uuUAGgCCGCGGaUGA------GCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 11836 0.76 0.209222
Target:  5'- --cUCUGGCguaagGCCU-CUgGCGCCGCCCu -3'
miRNA:   3'- uuuAGGCCG-----CGGAuGAgCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 4297 0.82 0.08175
Target:  5'- ---gCCGGCGCCUugguACUcgCGCGCCGCCUg -3'
miRNA:   3'- uuuaGGCCGCGGA----UGA--GCGCGGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 102921 0.76 0.189741
Target:  5'- uGGGUCCGGCGCCc---CGCGCCccgGCCCc -3'
miRNA:   3'- -UUUAGGCCGCGGaugaGCGCGG---CGGG- -5'
6603 5' -60.3 NC_001847.1 + 131818 0.76 0.209222
Target:  5'- gGAggCCGGCGCCgGCggcaGCGgCGCCCg -3'
miRNA:   3'- -UUuaGGCCGCGGaUGag--CGCgGCGGG- -5'
6603 5' -60.3 NC_001847.1 + 71632 0.75 0.230405
Target:  5'- ---aCUGGCGCa-ACUCGCGCUGCgCCg -3'
miRNA:   3'- uuuaGGCCGCGgaUGAGCGCGGCG-GG- -5'
6603 5' -60.3 NC_001847.1 + 34627 0.8 0.103361
Target:  5'- gAAGUCCGGCGCCUGC--GCGCCGaggCCg -3'
miRNA:   3'- -UUUAGGCCGCGGAUGagCGCGGCg--GG- -5'
6603 5' -60.3 NC_001847.1 + 99153 0.77 0.159471
Target:  5'- -uAUCCGcGCGCCUugUgGCGCCaGCCg -3'
miRNA:   3'- uuUAGGC-CGCGGAugAgCGCGG-CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.