miRNA display CGI


Results 1 - 20 of 213 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6609 3' -62.3 NC_001847.1 + 36848 0.65 0.6427
Target:  5'- gCGGACGUGCgcucgGCgGCGgccgagcucuacgcGGGGCuGCu -3'
miRNA:   3'- -GCCUGCACGaca--CGgCGC--------------UCCCG-CGc -5'
6609 3' -62.3 NC_001847.1 + 67187 0.66 0.639751
Target:  5'- aGGGCGcgcagguagcacacGCcGUGCCgaGCGGcGGGCGCGc -3'
miRNA:   3'- gCCUGCa-------------CGaCACGG--CGCU-CCCGCGC- -5'
6609 3' -62.3 NC_001847.1 + 27130 0.66 0.635817
Target:  5'- -cGACGUcGCgaaacUGCCGUccgGGGGGCGCa -3'
miRNA:   3'- gcCUGCA-CGac---ACGGCG---CUCCCGCGc -5'
6609 3' -62.3 NC_001847.1 + 12634 0.66 0.635817
Target:  5'- gGaGGCGgccGCUGcgGCUGCGGGGGagaggaGCGu -3'
miRNA:   3'- gC-CUGCa--CGACa-CGGCGCUCCCg-----CGC- -5'
6609 3' -62.3 NC_001847.1 + 13912 0.66 0.635817
Target:  5'- aCGGugGcugggGCgcucgGUGCCGCGccgcggcaGGGGgGCc -3'
miRNA:   3'- -GCCugCa----CGa----CACGGCGC--------UCCCgCGc -5'
6609 3' -62.3 NC_001847.1 + 53805 0.66 0.629916
Target:  5'- aGGAgGU-CUGcGCCcccuggcgcgccggaGCGGGGGCGCu -3'
miRNA:   3'- gCCUgCAcGACaCGG---------------CGCUCCCGCGc -5'
6609 3' -62.3 NC_001847.1 + 94681 0.66 0.625982
Target:  5'- aGGACGcuuaUGCccGUGCCGCGcaaguacuGGCGCu -3'
miRNA:   3'- gCCUGC----ACGa-CACGGCGCuc------CCGCGc -5'
6609 3' -62.3 NC_001847.1 + 106770 0.66 0.625982
Target:  5'- gGGGCGccGuCUccGgCGCGAGGGCGCc -3'
miRNA:   3'- gCCUGCa-C-GAcaCgGCGCUCCCGCGc -5'
6609 3' -62.3 NC_001847.1 + 108349 0.66 0.625982
Target:  5'- aCGGcCGUcGuCUGcgGCgCGCagGAGGGCGCGc -3'
miRNA:   3'- -GCCuGCA-C-GACa-CG-GCG--CUCCCGCGC- -5'
6609 3' -62.3 NC_001847.1 + 107879 0.66 0.625982
Target:  5'- aCGGACG-GCgg-GCCGgGAGcGG-GCGg -3'
miRNA:   3'- -GCCUGCaCGacaCGGCgCUC-CCgCGC- -5'
6609 3' -62.3 NC_001847.1 + 125581 0.66 0.625982
Target:  5'- gCGGGCGgcggGCUGgacgGCUgcaGCGcuGGCGCa -3'
miRNA:   3'- -GCCUGCa---CGACa---CGG---CGCucCCGCGc -5'
6609 3' -62.3 NC_001847.1 + 42320 0.66 0.625982
Target:  5'- aGGGCGagUGUUucGUGCUGUGGGcgcccguguGGCGCGg -3'
miRNA:   3'- gCCUGC--ACGA--CACGGCGCUC---------CCGCGC- -5'
6609 3' -62.3 NC_001847.1 + 12375 0.66 0.625982
Target:  5'- uCGG-CG-GCUGcgGCCuCG-GGGCGCGu -3'
miRNA:   3'- -GCCuGCaCGACa-CGGcGCuCCCGCGC- -5'
6609 3' -62.3 NC_001847.1 + 46533 0.66 0.625982
Target:  5'- gGGGCGgcgGCgGcGCgCGCGAGGuccuccagccGCGCGg -3'
miRNA:   3'- gCCUGCa--CGaCaCG-GCGCUCC----------CGCGC- -5'
6609 3' -62.3 NC_001847.1 + 5066 0.66 0.625982
Target:  5'- aCGGACG-GCgg-GCCGgGAGcGG-GCGg -3'
miRNA:   3'- -GCCUGCaCGacaCGGCgCUC-CCgCGC- -5'
6609 3' -62.3 NC_001847.1 + 47686 0.66 0.624999
Target:  5'- gCGGGCGcGC---GCCGCGGGGccguugaGCGCGc -3'
miRNA:   3'- -GCCUGCaCGacaCGGCGCUCC-------CGCGC- -5'
6609 3' -62.3 NC_001847.1 + 73044 0.66 0.624016
Target:  5'- gCGGACaaccUGCUGgcgaagcaacgcGCCGC--GGGCGCGg -3'
miRNA:   3'- -GCCUGc---ACGACa-----------CGGCGcuCCCGCGC- -5'
6609 3' -62.3 NC_001847.1 + 53952 0.66 0.616152
Target:  5'- gCGcGCGccgGCUGgcgccGCCGCGAGcccuccgagcGGCGCGg -3'
miRNA:   3'- -GCcUGCa--CGACa----CGGCGCUC----------CCGCGC- -5'
6609 3' -62.3 NC_001847.1 + 6663 0.66 0.616152
Target:  5'- uGGAUGUagagcgagGCUagGCCGCGGcggccggccGGGCGCGc -3'
miRNA:   3'- gCCUGCA--------CGAcaCGGCGCU---------CCCGCGC- -5'
6609 3' -62.3 NC_001847.1 + 62529 0.66 0.616152
Target:  5'- aCGGGCG-GCacGUGCCGUGcGGccagcaGCGCGu -3'
miRNA:   3'- -GCCUGCaCGa-CACGGCGCuCC------CGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.