miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6609 5' -55.9 NC_001847.1 + 104133 0.66 0.898556
Target:  5'- gCGCGCGCgC-CGgcaacGCcGGACAUGGUg -3'
miRNA:   3'- -GCGCGUGgGaGCa----CGaCUUGUACCAg -5'
6609 5' -55.9 NC_001847.1 + 67971 0.66 0.898556
Target:  5'- uGCGCGCCCUUGUcgaccggcgGCUugGGGCGgccGGUa -3'
miRNA:   3'- gCGCGUGGGAGCA---------CGA--CUUGUa--CCAg -5'
6609 5' -55.9 NC_001847.1 + 78971 0.66 0.898556
Target:  5'- uCGCGCAgCCUCGg---GGGCGUGcUCg -3'
miRNA:   3'- -GCGCGUgGGAGCacgaCUUGUACcAG- -5'
6609 5' -55.9 NC_001847.1 + 78660 0.66 0.8919
Target:  5'- gCGCGCGCCUgcgucgccggCGUGCgcacgcGGGCGcUGGUg -3'
miRNA:   3'- -GCGCGUGGGa---------GCACGa-----CUUGU-ACCAg -5'
6609 5' -55.9 NC_001847.1 + 82375 0.66 0.8919
Target:  5'- gCGCGCGCCg-CGUGaccugcGGGC-UGGUCa -3'
miRNA:   3'- -GCGCGUGGgaGCACga----CUUGuACCAG- -5'
6609 5' -55.9 NC_001847.1 + 110896 0.66 0.8919
Target:  5'- uGCucuCGCCCgccgcgCGgcgGCUGAACGUGGa- -3'
miRNA:   3'- gCGc--GUGGGa-----GCa--CGACUUGUACCag -5'
6609 5' -55.9 NC_001847.1 + 127252 0.66 0.885011
Target:  5'- cCGCGCGCCCcgCGcgGCU--AgGUGGUUu -3'
miRNA:   3'- -GCGCGUGGGa-GCa-CGAcuUgUACCAG- -5'
6609 5' -55.9 NC_001847.1 + 12327 0.66 0.885011
Target:  5'- gGCGCGCCCgccggcUCGcUGgUGAGCgGUGGg- -3'
miRNA:   3'- gCGCGUGGG------AGC-ACgACUUG-UACCag -5'
6609 5' -55.9 NC_001847.1 + 72336 0.66 0.880767
Target:  5'- aCGCGCugCUg-GUGCUGcaggaagccgugaccAACAUGGcCg -3'
miRNA:   3'- -GCGCGugGGagCACGAC---------------UUGUACCaG- -5'
6609 5' -55.9 NC_001847.1 + 50006 0.66 0.877893
Target:  5'- cCGCGCGCCCacCGccUGCUGGGCcccgGG-Cg -3'
miRNA:   3'- -GCGCGUGGGa-GC--ACGACUUGua--CCaG- -5'
6609 5' -55.9 NC_001847.1 + 81806 0.66 0.877893
Target:  5'- gCGCGuCGCUUUCc-GCUGcGGCGUGGUCc -3'
miRNA:   3'- -GCGC-GUGGGAGcaCGAC-UUGUACCAG- -5'
6609 5' -55.9 NC_001847.1 + 52420 0.66 0.87055
Target:  5'- gGCGCuggGCCCgcgCGUGgaGcACAUGGa- -3'
miRNA:   3'- gCGCG---UGGGa--GCACgaCuUGUACCag -5'
6609 5' -55.9 NC_001847.1 + 78150 0.66 0.87055
Target:  5'- aCGUG-GCCaggCG-GCUGAACAUGGUg -3'
miRNA:   3'- -GCGCgUGGga-GCaCGACUUGUACCAg -5'
6609 5' -55.9 NC_001847.1 + 86528 0.66 0.87055
Target:  5'- uGgGCGCCCgCGUGCUGGcgGCGcGGc- -3'
miRNA:   3'- gCgCGUGGGaGCACGACU--UGUaCCag -5'
6609 5' -55.9 NC_001847.1 + 69691 0.66 0.87055
Target:  5'- gCGCGCGCCCgccuacaCGgGC-GGGC-UGGUCu -3'
miRNA:   3'- -GCGCGUGGGa------GCaCGaCUUGuACCAG- -5'
6609 5' -55.9 NC_001847.1 + 74415 0.66 0.87055
Target:  5'- cCGCGCccgcGCCCgUCGUGgaGGuCGUGG-Cg -3'
miRNA:   3'- -GCGCG----UGGG-AGCACgaCUuGUACCaG- -5'
6609 5' -55.9 NC_001847.1 + 6913 0.66 0.862987
Target:  5'- gCGCGCGCCCUgCGcGCUGuugaaGGUg -3'
miRNA:   3'- -GCGCGUGGGA-GCaCGACuuguaCCAg -5'
6609 5' -55.9 NC_001847.1 + 43715 0.66 0.862987
Target:  5'- uGCGCGCgCUgCGcGC-GGACGUGGUg -3'
miRNA:   3'- gCGCGUGgGA-GCaCGaCUUGUACCAg -5'
6609 5' -55.9 NC_001847.1 + 67206 0.66 0.862987
Target:  5'- uGUGUGCCgUCGUGCUGcgcgGACGccGUCg -3'
miRNA:   3'- gCGCGUGGgAGCACGAC----UUGUacCAG- -5'
6609 5' -55.9 NC_001847.1 + 99845 0.67 0.855212
Target:  5'- gCGCGCGCCgCUCGgcgggGCUGcGCAguacGUUa -3'
miRNA:   3'- -GCGCGUGG-GAGCa----CGACuUGUac--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.