miRNA display CGI


Results 1 - 20 of 592 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6612 5' -60.2 NC_001847.1 + 61299 0.65 0.716447
Target:  5'- cCGCG-GCGGCguuuuuaugcgcgGgUGCGCGggGCGGg -3'
miRNA:   3'- aGCGCuCGUCGa------------CgGCGCGCuaCGCU- -5'
6612 5' -60.2 NC_001847.1 + 133187 0.66 0.714488
Target:  5'- gCGCGGGCugcccucgcuggaggAGCUcugcGCCGCGCGccgGCu- -3'
miRNA:   3'- aGCGCUCG---------------UCGA----CGGCGCGCua-CGcu -5'
6612 5' -60.2 NC_001847.1 + 20066 0.66 0.710563
Target:  5'- gCGgGAGCGGCgugGCgGCucccGCGgcGCGGc -3'
miRNA:   3'- aGCgCUCGUCGa--CGgCG----CGCuaCGCU- -5'
6612 5' -60.2 NC_001847.1 + 131357 0.66 0.710563
Target:  5'- cCGCGuGC-GCUucgGCgGCGCGG-GCGAc -3'
miRNA:   3'- aGCGCuCGuCGA---CGgCGCGCUaCGCU- -5'
6612 5' -60.2 NC_001847.1 + 77192 0.66 0.710563
Target:  5'- cCGCGAccgcGCuGCUGCC-CGCGAcggagccGCGGg -3'
miRNA:   3'- aGCGCU----CGuCGACGGcGCGCUa------CGCU- -5'
6612 5' -60.2 NC_001847.1 + 26980 0.66 0.710563
Target:  5'- gCGCGcGCAGCgcgucugcgGCgGCGCGGUugccguacucgGCGGc -3'
miRNA:   3'- aGCGCuCGUCGa--------CGgCGCGCUA-----------CGCU- -5'
6612 5' -60.2 NC_001847.1 + 77062 0.66 0.710563
Target:  5'- gCGCG-GCAcccGCUGCgGCGCGcgcGCGc -3'
miRNA:   3'- aGCGCuCGU---CGACGgCGCGCua-CGCu -5'
6612 5' -60.2 NC_001847.1 + 133351 0.66 0.710563
Target:  5'- gCGCaGGGCGuGCUGCUGCucuCGAcGCGGg -3'
miRNA:   3'- aGCG-CUCGU-CGACGGCGc--GCUaCGCU- -5'
6612 5' -60.2 NC_001847.1 + 47875 0.66 0.710563
Target:  5'- gCGCGcGCAGC-GCgCGCGCGcccGCGc -3'
miRNA:   3'- aGCGCuCGUCGaCG-GCGCGCua-CGCu -5'
6612 5' -60.2 NC_001847.1 + 60046 0.66 0.710563
Target:  5'- uUCGuCGGGC-GCgagGCgGCGCGAagagaGCGAc -3'
miRNA:   3'- -AGC-GCUCGuCGa--CGgCGCGCUa----CGCU- -5'
6612 5' -60.2 NC_001847.1 + 30538 0.66 0.710563
Target:  5'- gCGCaGGGCGuGCUGCUGCucuCGAcGCGGg -3'
miRNA:   3'- aGCG-CUCGU-CGACGGCGc--GCUaCGCU- -5'
6612 5' -60.2 NC_001847.1 + 112389 0.66 0.710563
Target:  5'- gCGCGAGUuuauuuGGUUGCgCGCcGCGcgGCa- -3'
miRNA:   3'- aGCGCUCG------UCGACG-GCG-CGCuaCGcu -5'
6612 5' -60.2 NC_001847.1 + 122357 0.66 0.710563
Target:  5'- aUCGuUGGGCGGCgugcgGCacaGCGCGuccaGCGAc -3'
miRNA:   3'- -AGC-GCUCGUCGa----CGg--CGCGCua--CGCU- -5'
6612 5' -60.2 NC_001847.1 + 28544 0.66 0.710563
Target:  5'- cCGCGuGC-GCUucgGCgGCGCGG-GCGAc -3'
miRNA:   3'- aGCGCuCGuCGA---CGgCGCGCUaCGCU- -5'
6612 5' -60.2 NC_001847.1 + 28447 0.66 0.710563
Target:  5'- aCGCc-GCGGC-GCCGCGCGAcggGCc- -3'
miRNA:   3'- aGCGcuCGUCGaCGGCGCGCUa--CGcu -5'
6612 5' -60.2 NC_001847.1 + 81806 0.66 0.710563
Target:  5'- gCGCGucGCuuuccGCUGCgGCGUGGUccagGCGAg -3'
miRNA:   3'- aGCGCu-CGu----CGACGgCGCGCUA----CGCU- -5'
6612 5' -60.2 NC_001847.1 + 62199 0.66 0.710563
Target:  5'- aCGCGcGCGuGCgGCUGCGUGA-GCGu -3'
miRNA:   3'- aGCGCuCGU-CGaCGGCGCGCUaCGCu -5'
6612 5' -60.2 NC_001847.1 + 14128 0.66 0.710563
Target:  5'- -aGCGAGCgggcgugucuccGGCcgGCUGCGCaGcgGCGGc -3'
miRNA:   3'- agCGCUCG------------UCGa-CGGCGCG-CuaCGCU- -5'
6612 5' -60.2 NC_001847.1 + 431 0.66 0.710563
Target:  5'- -gGCGGGCGGCgGCgGCgGCGGcagcaGCGGc -3'
miRNA:   3'- agCGCUCGUCGaCGgCG-CGCUa----CGCU- -5'
6612 5' -60.2 NC_001847.1 + 131437 0.66 0.710563
Target:  5'- gCGCGcGCGaUUGCCGCGCcuaccuguGGUGCGc -3'
miRNA:   3'- aGCGCuCGUcGACGGCGCG--------CUACGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.