miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6613 3' -50.7 NC_001847.1 + 90565 0.66 0.995426
Target:  5'- aCCGUCCGcGaGAGguCGAAcGGGAGcacCACg -3'
miRNA:   3'- -GGCAGGC-C-CUU--GCUUuUCCUCua-GUG- -5'
6613 3' -50.7 NC_001847.1 + 128719 0.66 0.995426
Target:  5'- -gGUgCGGGGuGCGAGGGGGAGGg--- -3'
miRNA:   3'- ggCAgGCCCU-UGCUUUUCCUCUagug -5'
6613 3' -50.7 NC_001847.1 + 25906 0.66 0.995426
Target:  5'- -gGUgCGGGGuGCGAGGGGGAGGg--- -3'
miRNA:   3'- ggCAgGCCCU-UGCUUUUCCUCUagug -5'
6613 3' -50.7 NC_001847.1 + 21915 0.66 0.994673
Target:  5'- gCCGaggCCGcGGGCGAGgcgGAGGAGAggacCGCg -3'
miRNA:   3'- -GGCa--GGCcCUUGCUU---UUCCUCUa---GUG- -5'
6613 3' -50.7 NC_001847.1 + 108090 0.66 0.994673
Target:  5'- uCCGgagacCCGGGGACGggGGuacGGcGAgCGCg -3'
miRNA:   3'- -GGCa----GGCCCUUGCuuUU---CCuCUaGUG- -5'
6613 3' -50.7 NC_001847.1 + 26722 0.66 0.994673
Target:  5'- aCGUCCaGGAACGcgcAGGcGggCACg -3'
miRNA:   3'- gGCAGGcCCUUGCuuuUCCuCuaGUG- -5'
6613 3' -50.7 NC_001847.1 + 5277 0.66 0.994673
Target:  5'- uCCGgagacCCGGGGACGggGGuacGGcGAgCGCg -3'
miRNA:   3'- -GGCa----GGCCCUUGCuuUU---CCuCUaGUG- -5'
6613 3' -50.7 NC_001847.1 + 127577 0.66 0.993824
Target:  5'- -aGUCaacagggGGGAGgGGAGGGGGGGgggCACa -3'
miRNA:   3'- ggCAGg------CCCUUgCUUUUCCUCUa--GUG- -5'
6613 3' -50.7 NC_001847.1 + 129613 0.66 0.993824
Target:  5'- gCCG-CCGGu-GCGAgGAAGGAGGagACg -3'
miRNA:   3'- -GGCaGGCCcuUGCU-UUUCCUCUagUG- -5'
6613 3' -50.7 NC_001847.1 + 129273 0.66 0.993824
Target:  5'- -gGggCGGGAAUGggGAGGGGAa--- -3'
miRNA:   3'- ggCagGCCCUUGCuuUUCCUCUagug -5'
6613 3' -50.7 NC_001847.1 + 26460 0.66 0.993824
Target:  5'- -gGggCGGGAAUGggGAGGGGAa--- -3'
miRNA:   3'- ggCagGCCCUUGCuuUUCCUCUagug -5'
6613 3' -50.7 NC_001847.1 + 110008 0.66 0.993824
Target:  5'- aCGgaggCCGuGGAgGCGAucaccacGGAGGUCGCg -3'
miRNA:   3'- gGCa---GGC-CCU-UGCUuuu----CCUCUAGUG- -5'
6613 3' -50.7 NC_001847.1 + 26800 0.66 0.993824
Target:  5'- gCCG-CCGGu-GCGAgGAAGGAGGagACg -3'
miRNA:   3'- -GGCaGGCCcuUGCU-UUUCCUCUagUG- -5'
6613 3' -50.7 NC_001847.1 + 24764 0.66 0.993824
Target:  5'- -aGUCaacagggGGGAGgGGAGGGGGGGgggCACa -3'
miRNA:   3'- ggCAGg------CCCUUgCUUUUCCUCUa--GUG- -5'
6613 3' -50.7 NC_001847.1 + 23432 0.66 0.992869
Target:  5'- gCGUCCGGGGucguCGGcgGGGcguccgGGGUCGu -3'
miRNA:   3'- gGCAGGCCCUu---GCUuuUCC------UCUAGUg -5'
6613 3' -50.7 NC_001847.1 + 118906 0.66 0.992869
Target:  5'- gCCGgggCCGGGGcCGAGGccGGGA-CGCg -3'
miRNA:   3'- -GGCa--GGCCCUuGCUUUucCUCUaGUG- -5'
6613 3' -50.7 NC_001847.1 + 34828 0.66 0.992869
Target:  5'- gCCGaCCGGGcGCuGGAGGcGAGcgCGCa -3'
miRNA:   3'- -GGCaGGCCCuUGcUUUUC-CUCuaGUG- -5'
6613 3' -50.7 NC_001847.1 + 126245 0.66 0.992869
Target:  5'- gCGUCCGGGGucguCGGcgGGGcguccgGGGUCGu -3'
miRNA:   3'- gGCAGGCCCUu---GCUuuUCC------UCUAGUg -5'
6613 3' -50.7 NC_001847.1 + 14222 0.66 0.991799
Target:  5'- gCCGgCCGGGGGCGu--GGuGAGggCAa -3'
miRNA:   3'- -GGCaGGCCCUUGCuuuUC-CUCuaGUg -5'
6613 3' -50.7 NC_001847.1 + 21836 0.66 0.991799
Target:  5'- gCCGUCCgaggcGGaGAACGAGgacagcgacgacGAGGAGGUgGa -3'
miRNA:   3'- -GGCAGG-----CC-CUUGCUU------------UUCCUCUAgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.