miRNA display CGI


Results 21 - 40 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6613 5' -60 NC_001847.1 + 106216 0.66 0.693486
Target:  5'- gGCuUGGUCUGgcgugGCGCUCGCCuGCaCGGc -3'
miRNA:   3'- -UGcACCAGAUg----CGCGAGCGG-CG-GCUu -5'
6613 5' -60 NC_001847.1 + 43007 0.66 0.693486
Target:  5'- cCGgGGgg-GCGCGCcggGCCGCCGAAa -3'
miRNA:   3'- uGCaCCagaUGCGCGag-CGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 57160 0.66 0.693486
Target:  5'- ---aGG---GCGCGCUCGCCGCCc-- -3'
miRNA:   3'- ugcaCCagaUGCGCGAGCGGCGGcuu -5'
6613 5' -60 NC_001847.1 + 102602 0.66 0.693486
Target:  5'- aGCGccgagGG-CUGCGCGCgcaUCGCCuCCGAc -3'
miRNA:   3'- -UGCa----CCaGAUGCGCG---AGCGGcGGCUu -5'
6613 5' -60 NC_001847.1 + 7351 0.66 0.693486
Target:  5'- -gGUGGUagccgucaGCGCGCUgcugccggCGCCGCUGAc -3'
miRNA:   3'- ugCACCAga------UGCGCGA--------GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 41350 0.66 0.68351
Target:  5'- cUGUGaccgC-ACGCGCUUGCgCGCCGAGa -3'
miRNA:   3'- uGCACca--GaUGCGCGAGCG-GCGGCUU- -5'
6613 5' -60 NC_001847.1 + 80808 0.66 0.68351
Target:  5'- uGCGcUGGUCcggGCGCGUgaggCGCCggauagcgagGCCGAc -3'
miRNA:   3'- -UGC-ACCAGa--UGCGCGa---GCGG----------CGGCUu -5'
6613 5' -60 NC_001847.1 + 53694 0.66 0.68351
Target:  5'- gAUGUGc---GCGCGCgagcgCGCCGCCGGc -3'
miRNA:   3'- -UGCACcagaUGCGCGa----GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 113936 0.66 0.68351
Target:  5'- cGCGcGGUCgcgGCgGCGUcuccuaCGCCGCCGGg -3'
miRNA:   3'- -UGCaCCAGa--UG-CGCGa-----GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 100357 0.66 0.68351
Target:  5'- cGCG-GGUCguagccGCGCGC-CGCgGCCGc- -3'
miRNA:   3'- -UGCaCCAGa-----UGCGCGaGCGgCGGCuu -5'
6613 5' -60 NC_001847.1 + 78046 0.66 0.68351
Target:  5'- ---aGGUCU-CGCGCUCGCC-CCu-- -3'
miRNA:   3'- ugcaCCAGAuGCGCGAGCGGcGGcuu -5'
6613 5' -60 NC_001847.1 + 30781 0.66 0.673493
Target:  5'- cGCGc-GUCUGCGgGCgcggaCGCCGCCGc- -3'
miRNA:   3'- -UGCacCAGAUGCgCGa----GCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 78054 0.67 0.663442
Target:  5'- cGCGgcGGUCcagcGCaGCGCUgGCCGCCGc- -3'
miRNA:   3'- -UGCa-CCAGa---UG-CGCGAgCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 47417 0.67 0.663442
Target:  5'- cCGUGGgcggcgUCUGCGaCGUcgucggcuUCGCCGCCGc- -3'
miRNA:   3'- uGCACC------AGAUGC-GCG--------AGCGGCGGCuu -5'
6613 5' -60 NC_001847.1 + 106952 0.67 0.663442
Target:  5'- cCGUGGcgCgcagGCGCGCg-GCCGCCa-- -3'
miRNA:   3'- uGCACCa-Ga---UGCGCGagCGGCGGcuu -5'
6613 5' -60 NC_001847.1 + 88551 0.67 0.663442
Target:  5'- cGCGUGG-CgugacCGCGCUCGCgCGCggcgCGAGa -3'
miRNA:   3'- -UGCACCaGau---GCGCGAGCG-GCG----GCUU- -5'
6613 5' -60 NC_001847.1 + 106264 0.67 0.663442
Target:  5'- cGCGUGcUCUGCaacuCGCcccagCGCCGCCGGc -3'
miRNA:   3'- -UGCACcAGAUGc---GCGa----GCGGCGGCUu -5'
6613 5' -60 NC_001847.1 + 21870 0.67 0.653368
Target:  5'- uGCGgGGgCUGCG-GCgCGCUGCCGAGg -3'
miRNA:   3'- -UGCaCCaGAUGCgCGaGCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 117821 0.67 0.653368
Target:  5'- gGCGccGG-CUACGCgGCcgugugccgCGCCGCCGAGu -3'
miRNA:   3'- -UGCa-CCaGAUGCG-CGa--------GCGGCGGCUU- -5'
6613 5' -60 NC_001847.1 + 71116 0.67 0.653368
Target:  5'- -aGUGGugccUCUucgGCGCGUaCGUCGCCGAc -3'
miRNA:   3'- ugCACC----AGA---UGCGCGaGCGGCGGCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.