miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 73786 0.66 0.937172
Target:  5'- aCGAgcgCGG-GGCGCUGGAAgcgcacGCCGuGGUCg -3'
miRNA:   3'- -GCUa--GUCgCCGUGGUCUU------UGGU-CCAG- -5'
6614 3' -54.5 NC_001847.1 + 31813 0.66 0.937172
Target:  5'- gCGGUgGGCGGCGCgggggCAGAGugCgAGGa- -3'
miRNA:   3'- -GCUAgUCGCCGUG-----GUCUUugG-UCCag -5'
6614 3' -54.5 NC_001847.1 + 33706 0.66 0.937172
Target:  5'- gGcgCGGCGGCGCguGGccgAGCUGGGg- -3'
miRNA:   3'- gCuaGUCGCCGUGguCU---UUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 76482 0.66 0.937172
Target:  5'- aCGG-CAGCGGCGCCugcagcgccuGGGAGCCcGuGUUc -3'
miRNA:   3'- -GCUaGUCGCCGUGG----------UCUUUGGuC-CAG- -5'
6614 3' -54.5 NC_001847.1 + 104036 0.66 0.937172
Target:  5'- ---cCAGCGcGCGCCGcccgcAGGCCAGGUa -3'
miRNA:   3'- gcuaGUCGC-CGUGGUc----UUUGGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 58296 0.66 0.937172
Target:  5'- gCGA-CGGCGGCgGCCGGcAGGCCGGc-- -3'
miRNA:   3'- -GCUaGUCGCCG-UGGUC-UUUGGUCcag -5'
6614 3' -54.5 NC_001847.1 + 100387 0.66 0.937172
Target:  5'- gCGcgCAGCcGCGCCAGcucGGCCGcGUCg -3'
miRNA:   3'- -GCuaGUCGcCGUGGUCu--UUGGUcCAG- -5'
6614 3' -54.5 NC_001847.1 + 1223 0.66 0.937172
Target:  5'- ---cCAGCGcGCGCCGcccgcAGGCCAGGUa -3'
miRNA:   3'- gcuaGUCGC-CGUGGUc----UUUGGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 116400 0.66 0.937172
Target:  5'- gCGG-CGGCGGCGCUcuGGGccCCGGGcCg -3'
miRNA:   3'- -GCUaGUCGCCGUGG--UCUuuGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 52128 0.66 0.936676
Target:  5'- gGGcCGGCGGCGCCccagcGGAccgacgaggccguGGCCAGGcUCc -3'
miRNA:   3'- gCUaGUCGCCGUGG-----UCU-------------UUGGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 127306 0.66 0.932101
Target:  5'- ---cCGGCGGUGCCGGAGACaCGGcGa- -3'
miRNA:   3'- gcuaGUCGCCGUGGUCUUUG-GUC-Cag -5'
6614 3' -54.5 NC_001847.1 + 108922 0.66 0.932101
Target:  5'- uGGUguGgGGaACCGGGGACUGGGUg -3'
miRNA:   3'- gCUAguCgCCgUGGUCUUUGGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 32992 0.66 0.932101
Target:  5'- gCGggCAG-GGCgGCCGGAGcgGCCGGGg- -3'
miRNA:   3'- -GCuaGUCgCCG-UGGUCUU--UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 23048 0.66 0.932101
Target:  5'- uCGAgcCAGUccaccuuGCGCCGGAccGCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGc------CGUGGUCUu-UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 13807 0.66 0.932101
Target:  5'- gGcgCAGCGGUguaCGGggGCCGGcGUg -3'
miRNA:   3'- gCuaGUCGCCGug-GUCuuUGGUC-CAg -5'
6614 3' -54.5 NC_001847.1 + 37000 0.66 0.928939
Target:  5'- cCGAgcggCGGCGGCGcgcucgagcugacgcCCGcGGACCuGGUCg -3'
miRNA:   3'- -GCUa---GUCGCCGU---------------GGUcUUUGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 64445 0.66 0.926781
Target:  5'- -aGUCGGCGGCcacgGCCAGccccGGGCCcgcGGUCc -3'
miRNA:   3'- gcUAGUCGCCG----UGGUC----UUUGGu--CCAG- -5'
6614 3' -54.5 NC_001847.1 + 3141 0.66 0.926781
Target:  5'- gGAgccCGGCGGCGCCGGcgGCgcggCGGGcCg -3'
miRNA:   3'- gCUa--GUCGCCGUGGUCuuUG----GUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 16270 0.66 0.926781
Target:  5'- uGuAUC-GCGGCAUCGGGuacGCCggcGGGUCg -3'
miRNA:   3'- gC-UAGuCGCCGUGGUCUu--UGG---UCCAG- -5'
6614 3' -54.5 NC_001847.1 + 5353 0.66 0.926781
Target:  5'- uGGUCGcGCGGCgcgGCCGGGc-CCAGGcUCc -3'
miRNA:   3'- gCUAGU-CGCCG---UGGUCUuuGGUCC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.