miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 80197 0.66 0.915391
Target:  5'- ----gAGCGGC-CCGuuAACUAGGUCg -3'
miRNA:   3'- gcuagUCGCCGuGGUcuUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 81286 0.66 0.915391
Target:  5'- gCGGUCGGCGcCGCCAGcgccGCCAGcGcCg -3'
miRNA:   3'- -GCUAGUCGCcGUGGUCuu--UGGUC-CaG- -5'
6614 3' -54.5 NC_001847.1 + 32992 0.66 0.932101
Target:  5'- gCGggCAG-GGCgGCCGGAGcgGCCGGGg- -3'
miRNA:   3'- -GCuaGUCgCCG-UGGUCUU--UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 108922 0.66 0.932101
Target:  5'- uGGUguGgGGaACCGGGGACUGGGUg -3'
miRNA:   3'- gCUAguCgCCgUGGUCUUUGGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 127306 0.66 0.932101
Target:  5'- ---cCGGCGGUGCCGGAGACaCGGcGa- -3'
miRNA:   3'- gcuaGUCGCCGUGGUCUUUG-GUC-Cag -5'
6614 3' -54.5 NC_001847.1 + 52128 0.66 0.936676
Target:  5'- gGGcCGGCGGCGCCccagcGGAccgacgaggccguGGCCAGGcUCc -3'
miRNA:   3'- gCUaGUCGCCGUGG-----UCU-------------UUGGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 58296 0.66 0.937172
Target:  5'- gCGA-CGGCGGCgGCCGGcAGGCCGGc-- -3'
miRNA:   3'- -GCUaGUCGCCG-UGGUC-UUUGGUCcag -5'
6614 3' -54.5 NC_001847.1 + 100387 0.66 0.937172
Target:  5'- gCGcgCAGCcGCGCCAGcucGGCCGcGUCg -3'
miRNA:   3'- -GCuaGUCGcCGUGGUCu--UUGGUcCAG- -5'
6614 3' -54.5 NC_001847.1 + 1223 0.66 0.937172
Target:  5'- ---cCAGCGcGCGCCGcccgcAGGCCAGGUa -3'
miRNA:   3'- gcuaGUCGC-CGUGGUc----UUUGGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 73786 0.66 0.937172
Target:  5'- aCGAgcgCGG-GGCGCUGGAAgcgcacGCCGuGGUCg -3'
miRNA:   3'- -GCUa--GUCgCCGUGGUCUU------UGGU-CCAG- -5'
6614 3' -54.5 NC_001847.1 + 64445 0.66 0.926781
Target:  5'- -aGUCGGCGGCcacgGCCAGccccGGGCCcgcGGUCc -3'
miRNA:   3'- gcUAGUCGCCG----UGGUC----UUUGGu--CCAG- -5'
6614 3' -54.5 NC_001847.1 + 3141 0.66 0.926781
Target:  5'- gGAgccCGGCGGCGCCGGcgGCgcggCGGGcCg -3'
miRNA:   3'- gCUa--GUCGCCGUGGUCuuUG----GUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 51518 0.66 0.915391
Target:  5'- cCGGU--GCGGCGCCGGcAGGCgGGGg- -3'
miRNA:   3'- -GCUAguCGCCGUGGUC-UUUGgUCCag -5'
6614 3' -54.5 NC_001847.1 + 90608 0.66 0.92064
Target:  5'- gGAUaAGCGGCACCGcGAGcucgcggacggcgGCCAGcucGUCa -3'
miRNA:   3'- gCUAgUCGCCGUGGU-CUU-------------UGGUC---CAG- -5'
6614 3' -54.5 NC_001847.1 + 105537 0.66 0.921211
Target:  5'- aCGG-CGGCGGCgaagugggGCgCAaAGGCCGGGUCu -3'
miRNA:   3'- -GCUaGUCGCCG--------UG-GUcUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 1408 0.66 0.921211
Target:  5'- uCGcgCGGCGGCACgGGc-ACCGcGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUGgUCuuUGGU-CCAg -5'
6614 3' -54.5 NC_001847.1 + 12503 0.66 0.921211
Target:  5'- gGAggccgCAGcCGGCGCgucguCAaAGACCAGGUCu -3'
miRNA:   3'- gCUa----GUC-GCCGUG-----GUcUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 26104 0.66 0.921211
Target:  5'- gGAgCAGUGGCGCUgggcaGGAAGCgGGGa- -3'
miRNA:   3'- gCUaGUCGCCGUGG-----UCUUUGgUCCag -5'
6614 3' -54.5 NC_001847.1 + 3812 0.66 0.921211
Target:  5'- cCGggCGGCGGCGgCGcGcuGCCGGGcCa -3'
miRNA:   3'- -GCuaGUCGCCGUgGU-CuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 16270 0.66 0.926781
Target:  5'- uGuAUC-GCGGCAUCGGGuacGCCggcGGGUCg -3'
miRNA:   3'- gC-UAGuCGCCGUGGUCUu--UGG---UCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.