Results 61 - 80 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6614 | 3' | -54.5 | NC_001847.1 | + | 102554 | 0.67 | 0.883327 |
Target: 5'- gCGA-CGGCGGCcgcgACUAGGcgcagcuuggcguccGCCAGGUCg -3' miRNA: 3'- -GCUaGUCGCCG----UGGUCUu--------------UGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 111838 | 0.67 | 0.896449 |
Target: 5'- gCGGcUCAGCGGCGCCG--AGCUGGaGUUu -3' miRNA: 3'- -GCU-AGUCGCCGUGGUcuUUGGUC-CAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 97938 | 0.67 | 0.896449 |
Target: 5'- cCGccaAGCGGCACCGGGcgccucgcACCGGGcUCu -3' miRNA: 3'- -GCuagUCGCCGUGGUCUu-------UGGUCC-AG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 63741 | 0.67 | 0.903008 |
Target: 5'- ---aCAGCGGCACCGGGAuguuGCCguugaugauacGGGg- -3' miRNA: 3'- gcuaGUCGCCGUGGUCUU----UGG-----------UCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 119446 | 0.67 | 0.903008 |
Target: 5'- cCGA-CGGCGGgggcaaaGCC-GAGAuCCAGGUCg -3' miRNA: 3'- -GCUaGUCGCCg------UGGuCUUU-GGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 115173 | 0.68 | 0.852197 |
Target: 5'- -aAUCGGCGGCGCCAaAAACCcacauguggaaGGGcCg -3' miRNA: 3'- gcUAGUCGCCGUGGUcUUUGG-----------UCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 47704 | 0.68 | 0.844055 |
Target: 5'- -cGUUGGCGGcCGCCGGGAacGCCAGcccGUCg -3' miRNA: 3'- gcUAGUCGCC-GUGGUCUU--UGGUC---CAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 56402 | 0.68 | 0.852197 |
Target: 5'- aGGUCGGcCGGCGCgGGGAcaGCCAccGcGUCg -3' miRNA: 3'- gCUAGUC-GCCGUGgUCUU--UGGU--C-CAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 35266 | 0.68 | 0.86013 |
Target: 5'- aGAUCAGCcGCGCUAGAAG--AGGUa -3' miRNA: 3'- gCUAGUCGcCGUGGUCUUUggUCCAg -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 58121 | 0.68 | 0.867848 |
Target: 5'- gGcgCGGCGgaugaGCGCCAGGAccuCCuGGUCg -3' miRNA: 3'- gCuaGUCGC-----CGUGGUCUUu--GGuCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 22424 | 0.68 | 0.827176 |
Target: 5'- gCGGg-GGCGGgGCCcGAGACCAcgcGGUCg -3' miRNA: 3'- -GCUagUCGCCgUGGuCUUUGGU---CCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 57539 | 0.68 | 0.827176 |
Target: 5'- ---cCAGCGGCgccGCCAGAAA-CGGGUg -3' miRNA: 3'- gcuaGUCGCCG---UGGUCUUUgGUCCAg -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 57966 | 0.68 | 0.827176 |
Target: 5'- gCGGUC-GCGGCGUCGGGAGgCAGGa- -3' miRNA: 3'- -GCUAGuCGCCGUGGUCUUUgGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 72716 | 0.68 | 0.827176 |
Target: 5'- cCGGUgGGCGGCAgCAGgcACgCGGG-Ca -3' miRNA: 3'- -GCUAgUCGCCGUgGUCuuUG-GUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 90315 | 0.68 | 0.835712 |
Target: 5'- gCGuUCGGUGGgGCCGccGggGCCGGGg- -3' miRNA: 3'- -GCuAGUCGCCgUGGU--CuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 15387 | 0.68 | 0.844055 |
Target: 5'- gCGGUCGGCgucGGgGCU-GggGCCGGGUUu -3' miRNA: 3'- -GCUAGUCG---CCgUGGuCuuUGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 32939 | 0.68 | 0.852197 |
Target: 5'- cCGG-CGGCGGgGCCgggggggcggaGGAGGCCGGGg- -3' miRNA: 3'- -GCUaGUCGCCgUGG-----------UCUUUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 79093 | 0.68 | 0.852197 |
Target: 5'- --uUCAGCGGCGCCuc---CCAGGg- -3' miRNA: 3'- gcuAGUCGCCGUGGucuuuGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 125237 | 0.68 | 0.827176 |
Target: 5'- gCGGg-GGCGGgGCCcGAGACCAcgcGGUCg -3' miRNA: 3'- -GCUagUCGCCgUGGuCUUUGGU---CCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 119707 | 0.68 | 0.852197 |
Target: 5'- --uUCAGCaGCGCCAGcuuAAACCAGcUCg -3' miRNA: 3'- gcuAGUCGcCGUGGUC---UUUGGUCcAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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