Results 121 - 140 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6614 | 3' | -54.5 | NC_001847.1 | + | 95274 | 0.72 | 0.661206 |
Target: 5'- gCGAUCGGgGGCGCCGGcAAGCUugcGGcCg -3' miRNA: 3'- -GCUAGUCgCCGUGGUC-UUUGGu--CCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 122440 | 0.72 | 0.650764 |
Target: 5'- uGggCAGCGGCACCucuaccuGAGGCUGGG-Ca -3' miRNA: 3'- gCuaGUCGCCGUGGu------CUUUGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 93834 | 0.72 | 0.661206 |
Target: 5'- cCGGcCGGCGGCGCCGGAAAC---GUCg -3' miRNA: 3'- -GCUaGUCGCCGUGGUCUUUGgucCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 97006 | 0.73 | 0.598493 |
Target: 5'- gGGUCGGCGGCGCUGGccGCgGGGg- -3' miRNA: 3'- gCUAGUCGCCGUGGUCuuUGgUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 28687 | 0.73 | 0.557089 |
Target: 5'- gCGuAUCGGCGGCGCUGGccuACCGGGa- -3' miRNA: 3'- -GC-UAGUCGCCGUGGUCuu-UGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 93075 | 0.73 | 0.557089 |
Target: 5'- cCGAUgcgccgCAGCGGCACCAGcc-CCAGG-Ca -3' miRNA: 3'- -GCUA------GUCGCCGUGGUCuuuGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 104952 | 0.73 | 0.557089 |
Target: 5'- gGGUCgaaGGCGaGCGCCGGgcGCCAGGg- -3' miRNA: 3'- gCUAG---UCGC-CGUGGUCuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 78135 | 0.73 | 0.608927 |
Target: 5'- ---gCAGCaGGCACCAGGAcgugGCCAGG-Cg -3' miRNA: 3'- gcuaGUCG-CCGUGGUCUU----UGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 9726 | 0.73 | 0.608927 |
Target: 5'- gGGUCcuccGGCGGCGCCGGGGcagucGCCGucGGUCc -3' miRNA: 3'- gCUAG----UCGCCGUGGUCUU-----UGGU--CCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 2139 | 0.73 | 0.557089 |
Target: 5'- gGGUCgaaGGCGaGCGCCGGgcGCCAGGg- -3' miRNA: 3'- gCUAG---UCGC-CGUGGUCuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 85086 | 0.73 | 0.598493 |
Target: 5'- uGAUCAGCGcCAgCAGGccgccGGCCAGGUUg -3' miRNA: 3'- gCUAGUCGCcGUgGUCU-----UUGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 16821 | 0.73 | 0.608927 |
Target: 5'- uCGggCAGCGGUGCCGGGuAGCCAGuGg- -3' miRNA: 3'- -GCuaGUCGCCGUGGUCU-UUGGUC-Cag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 62754 | 0.73 | 0.567376 |
Target: 5'- aCGAacacCAGCaccGGCGCUAGGAccACCGGGUCu -3' miRNA: 3'- -GCUa---GUCG---CCGUGGUCUU--UGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 8456 | 0.74 | 0.516545 |
Target: 5'- gGGUCggaGGCGGCGCCGG--GCCGGGg- -3' miRNA: 3'- gCUAG---UCGCCGUGGUCuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 100332 | 0.74 | 0.516545 |
Target: 5'- cCGGUCGGCcugccGCGCCAGcgGCCgcGGGUCg -3' miRNA: 3'- -GCUAGUCGc----CGUGGUCuuUGG--UCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 111269 | 0.74 | 0.516545 |
Target: 5'- gGGUCggaGGCGGCGCCGG--GCCGGGg- -3' miRNA: 3'- gCUAG---UCGCCGUGGUCuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 85241 | 0.75 | 0.477238 |
Target: 5'- gCGGcCGGCGGCGCCAGGugcGCgAGGUa -3' miRNA: 3'- -GCUaGUCGCCGUGGUCUu--UGgUCCAg -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 90841 | 0.75 | 0.458145 |
Target: 5'- aGAUCagcgAGCGGCGCCccGggGCCGGGg- -3' miRNA: 3'- gCUAG----UCGCCGUGGu-CuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 3969 | 0.75 | 0.486931 |
Target: 5'- cCGG-CGGCgagGGCGCCGGggGCCGGG-Cg -3' miRNA: 3'- -GCUaGUCG---CCGUGGUCuuUGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 130652 | 0.76 | 0.430293 |
Target: 5'- aGAUCGGCgaggacgccGGCGCCAGGGACgCGGGg- -3' miRNA: 3'- gCUAGUCG---------CCGUGGUCUUUG-GUCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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