miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 9726 0.73 0.608927
Target:  5'- gGGUCcuccGGCGGCGCCGGGGcagucGCCGucGGUCc -3'
miRNA:   3'- gCUAG----UCGCCGUGGUCUU-----UGGU--CCAG- -5'
6614 3' -54.5 NC_001847.1 + 78135 0.73 0.608927
Target:  5'- ---gCAGCaGGCACCAGGAcgugGCCAGG-Cg -3'
miRNA:   3'- gcuaGUCG-CCGUGGUCUU----UGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 54857 0.72 0.61938
Target:  5'- aCGAgcaUGGCGcGCGCC-GAAGCCGGGUUa -3'
miRNA:   3'- -GCUa--GUCGC-CGUGGuCUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 28096 0.72 0.629842
Target:  5'- gGggCGGCGGUGCCcucGggGCCAGGa- -3'
miRNA:   3'- gCuaGUCGCCGUGGu--CuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 130909 0.72 0.629842
Target:  5'- gGggCGGCGGUGCCcucGggGCCAGGa- -3'
miRNA:   3'- gCuaGUCGCCGUGGu--CuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 122440 0.72 0.650764
Target:  5'- uGggCAGCGGCACCucuaccuGAGGCUGGG-Ca -3'
miRNA:   3'- gCuaGUCGCCGUGGu------CUUUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 93834 0.72 0.661206
Target:  5'- cCGGcCGGCGGCGCCGGAAAC---GUCg -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCUUUGgucCAG- -5'
6614 3' -54.5 NC_001847.1 + 95274 0.72 0.661206
Target:  5'- gCGAUCGGgGGCGCCGGcAAGCUugcGGcCg -3'
miRNA:   3'- -GCUAGUCgCCGUGGUC-UUUGGu--CCaG- -5'
6614 3' -54.5 NC_001847.1 + 66058 0.71 0.682008
Target:  5'- uCGG-CGGCGGCGCCGGggGCgacgCGGGc- -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCuuUG----GUCCag -5'
6614 3' -54.5 NC_001847.1 + 134220 0.71 0.692349
Target:  5'- cCGAg-GGCGGCGgUGGGAagGCCGGGUCc -3'
miRNA:   3'- -GCUagUCGCCGUgGUCUU--UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 61777 0.71 0.692349
Target:  5'- aCGGUgGcGCGGUGCgGGuGGGCCGGGUCg -3'
miRNA:   3'- -GCUAgU-CGCCGUGgUC-UUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 123305 0.71 0.712864
Target:  5'- ----gGGCGGCGCCAGAGGCCuuacgccagAGGg- -3'
miRNA:   3'- gcuagUCGCCGUGGUCUUUGG---------UCCag -5'
6614 3' -54.5 NC_001847.1 + 21969 0.71 0.712864
Target:  5'- uGggCcGCGGCGCCGGuuGCCGcccgcGGUCg -3'
miRNA:   3'- gCuaGuCGCCGUGGUCuuUGGU-----CCAG- -5'
6614 3' -54.5 NC_001847.1 + 85668 0.71 0.723019
Target:  5'- uGAUCAGCaGCAgCAGc-GCCAGGcCg -3'
miRNA:   3'- gCUAGUCGcCGUgGUCuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 61829 0.7 0.737096
Target:  5'- aGGUCGGCGGcCAggguggugucguacuCCAGggG-CGGGUCg -3'
miRNA:   3'- gCUAGUCGCC-GU---------------GGUCuuUgGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 46373 0.7 0.743073
Target:  5'- --cUCGGCGGaCACCAGcAACCcGGUg -3'
miRNA:   3'- gcuAGUCGCC-GUGGUCuUUGGuCCAg -5'
6614 3' -54.5 NC_001847.1 + 79594 0.7 0.752953
Target:  5'- uCGggCGGgGGCGCCGGGGgcguugucGCC-GGUCg -3'
miRNA:   3'- -GCuaGUCgCCGUGGUCUU--------UGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 79053 0.7 0.762721
Target:  5'- aCGcgCuuaacGCGGCGCCGGA-GCCGGG-Cg -3'
miRNA:   3'- -GCuaGu----CGCCGUGGUCUuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 81185 0.7 0.769488
Target:  5'- aGGgcucgCGGCGGCGCCAGccggcgcgcgcguaGAugCAGGcUCg -3'
miRNA:   3'- gCUa----GUCGCCGUGGUC--------------UUugGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 18175 0.7 0.77141
Target:  5'- gCGGUCGGCgucgcagGGCAgCCGGAGcaccGCCAGG-Ca -3'
miRNA:   3'- -GCUAGUCG-------CCGU-GGUCUU----UGGUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.