miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 43297 0.7 0.772369
Target:  5'- uGAUC-GC-GCACCAGGaggcGugCAGGUCg -3'
miRNA:   3'- gCUAGuCGcCGUGGUCU----UugGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 81951 0.7 0.772369
Target:  5'- uCGAggUGGCGGCgcGCCAc-AGCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGCCG--UGGUcuUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 96189 0.7 0.772369
Target:  5'- cCGG-CAGCGGCaauggcgggGCCGGAGucgggGCCGGaGUCg -3'
miRNA:   3'- -GCUaGUCGCCG---------UGGUCUU-----UGGUC-CAG- -5'
6614 3' -54.5 NC_001847.1 + 97885 0.69 0.78094
Target:  5'- -aGUCGGCGGCGCgGauggcGAAcagcgcgccguccGCCGGGUCg -3'
miRNA:   3'- gcUAGUCGCCGUGgU-----CUU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 93529 0.69 0.781886
Target:  5'- ---cCGGCGGCcCCGGAGcgcCCGGGUUa -3'
miRNA:   3'- gcuaGUCGCCGuGGUCUUu--GGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 130584 0.69 0.781886
Target:  5'- gGAgagCAGCgaggacgacGGCGCCGGAGACgCGGGg- -3'
miRNA:   3'- gCUa--GUCG---------CCGUGGUCUUUG-GUCCag -5'
6614 3' -54.5 NC_001847.1 + 27771 0.69 0.781886
Target:  5'- gGAgagCAGCgaggacgacGGCGCCGGAGACgCGGGg- -3'
miRNA:   3'- gCUa--GUCG---------CCGUGGUCUUUG-GUCCag -5'
6614 3' -54.5 NC_001847.1 + 554 0.69 0.799572
Target:  5'- aCGuggCGGCGGaCGCCAGcGccgcgucuccggcGCCGGGUCc -3'
miRNA:   3'- -GCua-GUCGCC-GUGGUCuU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 103367 0.69 0.799572
Target:  5'- aCGuggCGGCGGaCGCCAGcGccgcgucuccggcGCCGGGUCc -3'
miRNA:   3'- -GCua-GUCGCC-GUGGUCuU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 3424 0.69 0.800488
Target:  5'- ---cCGGgGGCGCCAGGcgcAGCCcaggGGGUCg -3'
miRNA:   3'- gcuaGUCgCCGUGGUCU---UUGG----UCCAG- -5'
6614 3' -54.5 NC_001847.1 + 58566 0.69 0.800488
Target:  5'- ---gCGGCGGCgaagAUCGGggGCCGGGcCg -3'
miRNA:   3'- gcuaGUCGCCG----UGGUCuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 80641 0.69 0.809555
Target:  5'- gCGA-CGGCGGCGCUcgcgGGAGACCcGG-Cg -3'
miRNA:   3'- -GCUaGUCGCCGUGG----UCUUUGGuCCaG- -5'
6614 3' -54.5 NC_001847.1 + 17839 0.69 0.817572
Target:  5'- aGGUCGcccaucGCGGCucgcguuGCCAGcgccGCCGGGUCg -3'
miRNA:   3'- gCUAGU------CGCCG-------UGGUCuu--UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 95824 0.69 0.818454
Target:  5'- cCGGcUCGGCGGCAggGGcAAGCCAGG-Ca -3'
miRNA:   3'- -GCU-AGUCGCCGUggUC-UUUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 105848 0.69 0.818454
Target:  5'- cCGAgcagcUCGGCGGC-CCGGAGcacgcgcuCCGGGUg -3'
miRNA:   3'- -GCU-----AGUCGCCGuGGUCUUu-------GGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 72039 0.69 0.818454
Target:  5'- gCGG-CGGCGGCcCCGGGGcguACCcGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGuGGUCUU---UGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 3035 0.69 0.818454
Target:  5'- cCGAgcagcUCGGCGGC-CCGGAGcacgcgcuCCGGGUg -3'
miRNA:   3'- -GCU-----AGUCGCCGuGGUCUUu-------GGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 48175 0.69 0.821964
Target:  5'- cCGGcCGGCGGCguccugcugugccgcGCCGGcgGCCAGGg- -3'
miRNA:   3'- -GCUaGUCGCCG---------------UGGUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 22424 0.68 0.827176
Target:  5'- gCGGg-GGCGGgGCCcGAGACCAcgcGGUCg -3'
miRNA:   3'- -GCUagUCGCCgUGGuCUUUGGU---CCAG- -5'
6614 3' -54.5 NC_001847.1 + 57539 0.68 0.827176
Target:  5'- ---cCAGCGGCgccGCCAGAAA-CGGGUg -3'
miRNA:   3'- gcuaGUCGCCG---UGGUCUUUgGUCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.