miRNA display CGI


Results 21 - 40 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 16270 0.66 0.926781
Target:  5'- uGuAUC-GCGGCAUCGGGuacGCCggcGGGUCg -3'
miRNA:   3'- gC-UAGuCGCCGUGGUCUu--UGG---UCCAG- -5'
6614 3' -54.5 NC_001847.1 + 35308 0.66 0.921211
Target:  5'- cCGAgCGGCGcGCGCUGGAAGCgGGcGUg -3'
miRNA:   3'- -GCUaGUCGC-CGUGGUCUUUGgUC-CAg -5'
6614 3' -54.5 NC_001847.1 + 59280 0.66 0.921211
Target:  5'- uCGAgcccCGGCGGCGggaaaccguacCCAGGGuGCCAGGg- -3'
miRNA:   3'- -GCUa---GUCGCCGU-----------GGUCUU-UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 128917 0.66 0.921211
Target:  5'- gGAgCAGUGGCGCUgggcaGGAAGCgGGGa- -3'
miRNA:   3'- gCUaGUCGCCGUGG-----UCUUUGgUCCag -5'
6614 3' -54.5 NC_001847.1 + 1408 0.66 0.921211
Target:  5'- uCGcgCGGCGGCACgGGc-ACCGcGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUGgUCuuUGGU-CCAg -5'
6614 3' -54.5 NC_001847.1 + 104221 0.66 0.921211
Target:  5'- uCGcgCGGCGGCACgGGc-ACCGcGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUGgUCuuUGGU-CCAg -5'
6614 3' -54.5 NC_001847.1 + 3812 0.66 0.921211
Target:  5'- cCGggCGGCGGCGgCGcGcuGCCGGGcCa -3'
miRNA:   3'- -GCuaGUCGCCGUgGU-CuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 68972 0.66 0.921211
Target:  5'- gGggCGGcCGGCGCCAGc--CCGGGa- -3'
miRNA:   3'- gCuaGUC-GCCGUGGUCuuuGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 26104 0.66 0.921211
Target:  5'- gGAgCAGUGGCGCUgggcaGGAAGCgGGGa- -3'
miRNA:   3'- gCUaGUCGCCGUGG-----UCUUUGgUCCag -5'
6614 3' -54.5 NC_001847.1 + 12503 0.66 0.921211
Target:  5'- gGAggccgCAGcCGGCGCgucguCAaAGACCAGGUCu -3'
miRNA:   3'- gCUa----GUC-GCCGUG-----GUcUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 106625 0.66 0.921211
Target:  5'- cCGggCGGCGGCGgCGcGcuGCCGGGcCa -3'
miRNA:   3'- -GCuaGUCGCCGUgGU-CuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 105537 0.66 0.921211
Target:  5'- aCGG-CGGCGGCgaagugggGCgCAaAGGCCGGGUCu -3'
miRNA:   3'- -GCUaGUCGCCG--------UG-GUcUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 90608 0.66 0.92064
Target:  5'- gGAUaAGCGGCACCGcGAGcucgcggacggcgGCCAGcucGUCa -3'
miRNA:   3'- gCUAgUCGCCGUGGU-CUU-------------UGGUC---CAG- -5'
6614 3' -54.5 NC_001847.1 + 51518 0.66 0.915391
Target:  5'- cCGGU--GCGGCGCCGGcAGGCgGGGg- -3'
miRNA:   3'- -GCUAguCGCCGUGGUC-UUUGgUCCag -5'
6614 3' -54.5 NC_001847.1 + 81286 0.66 0.915391
Target:  5'- gCGGUCGGCGcCGCCAGcgccGCCAGcGcCg -3'
miRNA:   3'- -GCUAGUCGCcGUGGUCuu--UGGUC-CaG- -5'
6614 3' -54.5 NC_001847.1 + 80197 0.66 0.915391
Target:  5'- ----gAGCGGC-CCGuuAACUAGGUCg -3'
miRNA:   3'- gcuagUCGCCGuGGUcuUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 52670 0.66 0.915391
Target:  5'- --uUCGGCGGCcCCGuggccGggGCCGGGcCc -3'
miRNA:   3'- gcuAGUCGCCGuGGU-----CuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 23507 0.66 0.915391
Target:  5'- ----aGGUGGCAcCCAGAGcacACgAGGUCg -3'
miRNA:   3'- gcuagUCGCCGU-GGUCUU---UGgUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 64467 0.66 0.915391
Target:  5'- ---gCGGCGGCGCgGGggGCCgaagcAGGg- -3'
miRNA:   3'- gcuaGUCGCCGUGgUCuuUGG-----UCCag -5'
6614 3' -54.5 NC_001847.1 + 81489 0.66 0.915391
Target:  5'- aGuUgAGCGGC-CCGGguGCCcGGUCu -3'
miRNA:   3'- gCuAgUCGCCGuGGUCuuUGGuCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.