miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 42967 0.66 0.91178
Target:  5'- aCGGaCGGCGGCguucccggcaacaacGCCGGGAacgccGCCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCG---------------UGGUCUU-----UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 131600 0.66 0.909323
Target:  5'- ---gCAGCGGCGCgugCAGGGcuGCCGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUG---GUCUU--UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 75201 0.66 0.909323
Target:  5'- gGGUCugucuGCaGGCGCaCGgucagcGAGGCCAGGUCc -3'
miRNA:   3'- gCUAGu----CG-CCGUG-GU------CUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 76394 0.66 0.909323
Target:  5'- uCGGg-GGgGGCGCCGGggGCCGcGG-Cg -3'
miRNA:   3'- -GCUagUCgCCGUGGUCuuUGGU-CCaG- -5'
6614 3' -54.5 NC_001847.1 + 13156 0.66 0.909323
Target:  5'- gCGAccCAGCuGCGCCgAGAcGugCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGcCGUGG-UCU-UugGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 28787 0.66 0.909323
Target:  5'- ---gCAGCGGCGCgugCAGGGcuGCCGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUG---GUCUU--UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 50739 0.66 0.909323
Target:  5'- cCGG-CuGCGGCACCGGcuGCCccGGUUu -3'
miRNA:   3'- -GCUaGuCGCCGUGGUCuuUGGu-CCAG- -5'
6614 3' -54.5 NC_001847.1 + 119446 0.67 0.903008
Target:  5'- cCGA-CGGCGGgggcaaaGCC-GAGAuCCAGGUCg -3'
miRNA:   3'- -GCUaGUCGCCg------UGGuCUUU-GGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 63741 0.67 0.903008
Target:  5'- ---aCAGCGGCACCGGGAuguuGCCguugaugauacGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUGGUCUU----UGG-----------UCCag -5'
6614 3' -54.5 NC_001847.1 + 111838 0.67 0.896449
Target:  5'- gCGGcUCAGCGGCGCCG--AGCUGGaGUUu -3'
miRNA:   3'- -GCU-AGUCGCCGUGGUcuUUGGUC-CAG- -5'
6614 3' -54.5 NC_001847.1 + 55362 0.67 0.896449
Target:  5'- aCGcgCcGCgGGCGCCGGAGAC--GGUCg -3'
miRNA:   3'- -GCuaGuCG-CCGUGGUCUUUGguCCAG- -5'
6614 3' -54.5 NC_001847.1 + 97938 0.67 0.896449
Target:  5'- cCGccaAGCGGCACCGGGcgccucgcACCGGGcUCu -3'
miRNA:   3'- -GCuagUCGCCGUGGUCUu-------UGGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 69463 0.67 0.88965
Target:  5'- gCGcgCGGCGGCGgCGGGgcuccugcuGGCCGGGc- -3'
miRNA:   3'- -GCuaGUCGCCGUgGUCU---------UUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 81231 0.67 0.88965
Target:  5'- gCGG-CAGCGGCGgCGG--GCCAGGc- -3'
miRNA:   3'- -GCUaGUCGCCGUgGUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 75382 0.67 0.88965
Target:  5'- uGggCA-CGGCACCGGAcgcGGCCAGcgaGUCg -3'
miRNA:   3'- gCuaGUcGCCGUGGUCU---UUGGUC---CAG- -5'
6614 3' -54.5 NC_001847.1 + 75100 0.67 0.887563
Target:  5'- -cGUCGGCGGCGCCccggcgcuugcccgAGAAggcccgggccccGCCGGGg- -3'
miRNA:   3'- gcUAGUCGCCGUGG--------------UCUU------------UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 102554 0.67 0.883327
Target:  5'- gCGA-CGGCGGCcgcgACUAGGcgcagcuuggcguccGCCAGGUCg -3'
miRNA:   3'- -GCUaGUCGCCG----UGGUCUu--------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 48245 0.67 0.882613
Target:  5'- uCGAUCAGCuGGCccucgucgcgcACCccgcAGGCUAGGUCg -3'
miRNA:   3'- -GCUAGUCG-CCG-----------UGGuc--UUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 12950 0.67 0.882613
Target:  5'- gCGGUgGgGCGGCggGCCGGGgguGGCCcGGUCg -3'
miRNA:   3'- -GCUAgU-CGCCG--UGGUCU---UUGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 54693 0.67 0.881896
Target:  5'- gCGG-CGGCGGCGCCcgcgGGGAggacgacGCgCGGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUGG----UCUU-------UG-GUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.