miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 105570 0.67 0.875344
Target:  5'- gGcgCGGCGGCGCCGGc-GCCGGcGcCc -3'
miRNA:   3'- gCuaGUCGCCGUGGUCuuUGGUC-CaG- -5'
6614 3' -54.5 NC_001847.1 + 100743 0.67 0.875344
Target:  5'- cCGAgcUCu-CGGgGCCGGGGuCCAGGUCg -3'
miRNA:   3'- -GCU--AGucGCCgUGGUCUUuGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 96078 0.67 0.875344
Target:  5'- cCGG-CGGCGGCAauggcGGAGCCGGaGUCg -3'
miRNA:   3'- -GCUaGUCGCCGUggu--CUUUGGUC-CAG- -5'
6614 3' -54.5 NC_001847.1 + 2757 0.67 0.875344
Target:  5'- gGcgCGGCGGCGCCGGc-GCCGGcGcCc -3'
miRNA:   3'- gCuaGUCGCCGUGGUCuuUGGUC-CaG- -5'
6614 3' -54.5 NC_001847.1 + 96258 0.67 0.875344
Target:  5'- cCGG-CGGCGGCaauggcgggGCCGGA-ACCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCG---------UGGUCUuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 58121 0.68 0.867848
Target:  5'- gGcgCGGCGgaugaGCGCCAGGAccuCCuGGUCg -3'
miRNA:   3'- gCuaGUCGC-----CGUGGUCUUu--GGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 33030 0.68 0.867086
Target:  5'- gCGAggcgCGgacGCGGCGCaGGAguuuauuGACCGGGUCg -3'
miRNA:   3'- -GCUa---GU---CGCCGUGgUCU-------UUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 16829 0.68 0.86013
Target:  5'- gGAUCGGUGGCGCgGGc-AUCGGGg- -3'
miRNA:   3'- gCUAGUCGCCGUGgUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 101519 0.68 0.86013
Target:  5'- gCGGUCAGCcgccGCGCCcGucGCCAGGg- -3'
miRNA:   3'- -GCUAGUCGc---CGUGGuCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 35266 0.68 0.86013
Target:  5'- aGAUCAGCcGCGCUAGAAG--AGGUa -3'
miRNA:   3'- gCUAGUCGcCGUGGUCUUUggUCCAg -5'
6614 3' -54.5 NC_001847.1 + 108357 0.68 0.857772
Target:  5'- -cGUCuGCGGCGCgCAGGagggcgcgcgcacuGACCAGGcCg -3'
miRNA:   3'- gcUAGuCGCCGUG-GUCU--------------UUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 119707 0.68 0.852197
Target:  5'- --uUCAGCaGCGCCAGcuuAAACCAGcUCg -3'
miRNA:   3'- gcuAGUCGcCGUGGUC---UUUGGUCcAG- -5'
6614 3' -54.5 NC_001847.1 + 115173 0.68 0.852197
Target:  5'- -aAUCGGCGGCGCCAaAAACCcacauguggaaGGGcCg -3'
miRNA:   3'- gcUAGUCGCCGUGGUcUUUGG-----------UCCaG- -5'
6614 3' -54.5 NC_001847.1 + 79093 0.68 0.852197
Target:  5'- --uUCAGCGGCGCCuc---CCAGGg- -3'
miRNA:   3'- gcuAGUCGCCGUGGucuuuGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 32939 0.68 0.852197
Target:  5'- cCGG-CGGCGGgGCCgggggggcggaGGAGGCCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCgUGG-----------UCUUUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 56402 0.68 0.852197
Target:  5'- aGGUCGGcCGGCGCgGGGAcaGCCAccGcGUCg -3'
miRNA:   3'- gCUAGUC-GCCGUGgUCUU--UGGU--C-CAG- -5'
6614 3' -54.5 NC_001847.1 + 15387 0.68 0.844055
Target:  5'- gCGGUCGGCgucGGgGCU-GggGCCGGGUUu -3'
miRNA:   3'- -GCUAGUCG---CCgUGGuCuuUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 47704 0.68 0.844055
Target:  5'- -cGUUGGCGGcCGCCGGGAacGCCAGcccGUCg -3'
miRNA:   3'- gcUAGUCGCC-GUGGUCUU--UGGUC---CAG- -5'
6614 3' -54.5 NC_001847.1 + 66243 0.68 0.844055
Target:  5'- aGcgCGGCGGCGCuCGGcaugcuGGGCCGGGg- -3'
miRNA:   3'- gCuaGUCGCCGUG-GUC------UUUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 90315 0.68 0.835712
Target:  5'- gCGuUCGGUGGgGCCGccGggGCCGGGg- -3'
miRNA:   3'- -GCuAGUCGCCgUGGU--CuuUGGUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.