miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 554 0.69 0.799572
Target:  5'- aCGuggCGGCGGaCGCCAGcGccgcgucuccggcGCCGGGUCc -3'
miRNA:   3'- -GCua-GUCGCC-GUGGUCuU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 1223 0.66 0.937172
Target:  5'- ---cCAGCGcGCGCCGcccgcAGGCCAGGUa -3'
miRNA:   3'- gcuaGUCGC-CGUGGUc----UUUGGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 1408 0.66 0.921211
Target:  5'- uCGcgCGGCGGCACgGGc-ACCGcGGUg -3'
miRNA:   3'- -GCuaGUCGCCGUGgUCuuUGGU-CCAg -5'
6614 3' -54.5 NC_001847.1 + 2139 0.73 0.557089
Target:  5'- gGGUCgaaGGCGaGCGCCGGgcGCCAGGg- -3'
miRNA:   3'- gCUAG---UCGC-CGUGGUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 2757 0.67 0.875344
Target:  5'- gGcgCGGCGGCGCCGGc-GCCGGcGcCc -3'
miRNA:   3'- gCuaGUCGCCGUGGUCuuUGGUC-CaG- -5'
6614 3' -54.5 NC_001847.1 + 3035 0.69 0.818454
Target:  5'- cCGAgcagcUCGGCGGC-CCGGAGcacgcgcuCCGGGUg -3'
miRNA:   3'- -GCU-----AGUCGCCGuGGUCUUu-------GGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 3141 0.66 0.926781
Target:  5'- gGAgccCGGCGGCGCCGGcgGCgcggCGGGcCg -3'
miRNA:   3'- gCUa--GUCGCCGUGGUCuuUG----GUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 3424 0.69 0.800488
Target:  5'- ---cCGGgGGCGCCAGGcgcAGCCcaggGGGUCg -3'
miRNA:   3'- gcuaGUCgCCGUGGUCU---UUGG----UCCAG- -5'
6614 3' -54.5 NC_001847.1 + 3812 0.66 0.921211
Target:  5'- cCGggCGGCGGCGgCGcGcuGCCGGGcCa -3'
miRNA:   3'- -GCuaGUCGCCGUgGU-CuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 3969 0.75 0.486931
Target:  5'- cCGG-CGGCgagGGCGCCGGggGCCGGG-Cg -3'
miRNA:   3'- -GCUaGUCG---CCGUGGUCuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 5353 0.66 0.926781
Target:  5'- uGGUCGcGCGGCgcgGCCGGGc-CCAGGcUCc -3'
miRNA:   3'- gCUAGU-CGCCG---UGGUCUuuGGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 8098 0.68 0.827176
Target:  5'- aGAUCGgcgacGCGGCGCCAGcgcAGGCgCGGGg- -3'
miRNA:   3'- gCUAGU-----CGCCGUGGUC---UUUG-GUCCag -5'
6614 3' -54.5 NC_001847.1 + 8456 0.74 0.516545
Target:  5'- gGGUCggaGGCGGCGCCGG--GCCGGGg- -3'
miRNA:   3'- gCUAG---UCGCCGUGGUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 9726 0.73 0.608927
Target:  5'- gGGUCcuccGGCGGCGCCGGGGcagucGCCGucGGUCc -3'
miRNA:   3'- gCUAG----UCGCCGUGGUCUU-----UGGU--CCAG- -5'
6614 3' -54.5 NC_001847.1 + 12503 0.66 0.921211
Target:  5'- gGAggccgCAGcCGGCGCgucguCAaAGACCAGGUCu -3'
miRNA:   3'- gCUa----GUC-GCCGUG-----GUcUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 12950 0.67 0.882613
Target:  5'- gCGGUgGgGCGGCggGCCGGGgguGGCCcGGUCg -3'
miRNA:   3'- -GCUAgU-CGCCG--UGGUCU---UUGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 13156 0.66 0.909323
Target:  5'- gCGAccCAGCuGCGCCgAGAcGugCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGcCGUGG-UCU-UugGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 13807 0.66 0.932101
Target:  5'- gGcgCAGCGGUguaCGGggGCCGGcGUg -3'
miRNA:   3'- gCuaGUCGCCGug-GUCuuUGGUC-CAg -5'
6614 3' -54.5 NC_001847.1 + 15387 0.68 0.844055
Target:  5'- gCGGUCGGCgucGGgGCU-GggGCCGGGUUu -3'
miRNA:   3'- -GCUAGUCG---CCgUGGuCuuUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 16270 0.66 0.926781
Target:  5'- uGuAUC-GCGGCAUCGGGuacGCCggcGGGUCg -3'
miRNA:   3'- gC-UAGuCGCCGUGGUCUu--UGG---UCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.