miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 16821 0.73 0.608927
Target:  5'- uCGggCAGCGGUGCCGGGuAGCCAGuGg- -3'
miRNA:   3'- -GCuaGUCGCCGUGGUCU-UUGGUC-Cag -5'
6614 3' -54.5 NC_001847.1 + 16829 0.68 0.86013
Target:  5'- gGAUCGGUGGCGCgGGc-AUCGGGg- -3'
miRNA:   3'- gCUAGUCGCCGUGgUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 17839 0.69 0.817572
Target:  5'- aGGUCGcccaucGCGGCucgcguuGCCAGcgccGCCGGGUCg -3'
miRNA:   3'- gCUAGU------CGCCG-------UGGUCuu--UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 18175 0.7 0.77141
Target:  5'- gCGGUCGGCgucgcagGGCAgCCGGAGcaccGCCAGG-Ca -3'
miRNA:   3'- -GCUAGUCG-------CCGU-GGUCUU----UGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 21969 0.71 0.712864
Target:  5'- uGggCcGCGGCGCCGGuuGCCGcccgcGGUCg -3'
miRNA:   3'- gCuaGuCGCCGUGGUCuuUGGU-----CCAG- -5'
6614 3' -54.5 NC_001847.1 + 22424 0.68 0.827176
Target:  5'- gCGGg-GGCGGgGCCcGAGACCAcgcGGUCg -3'
miRNA:   3'- -GCUagUCGCCgUGGuCUUUGGU---CCAG- -5'
6614 3' -54.5 NC_001847.1 + 23048 0.66 0.932101
Target:  5'- uCGAgcCAGUccaccuuGCGCCGGAccGCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGc------CGUGGUCUu-UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 23507 0.66 0.915391
Target:  5'- ----aGGUGGCAcCCAGAGcacACgAGGUCg -3'
miRNA:   3'- gcuagUCGCCGU-GGUCUU---UGgUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 26104 0.66 0.921211
Target:  5'- gGAgCAGUGGCGCUgggcaGGAAGCgGGGa- -3'
miRNA:   3'- gCUaGUCGCCGUGG-----UCUUUGgUCCag -5'
6614 3' -54.5 NC_001847.1 + 27771 0.69 0.781886
Target:  5'- gGAgagCAGCgaggacgacGGCGCCGGAGACgCGGGg- -3'
miRNA:   3'- gCUa--GUCG---------CCGUGGUCUUUG-GUCCag -5'
6614 3' -54.5 NC_001847.1 + 27839 0.76 0.430293
Target:  5'- aGAUCGGCgaggacgccGGCGCCAGGGACgCGGGg- -3'
miRNA:   3'- gCUAGUCG---------CCGUGGUCUUUG-GUCCag -5'
6614 3' -54.5 NC_001847.1 + 28096 0.72 0.629842
Target:  5'- gGggCGGCGGUGCCcucGggGCCAGGa- -3'
miRNA:   3'- gCuaGUCGCCGUGGu--CuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 28687 0.73 0.557089
Target:  5'- gCGuAUCGGCGGCGCUGGccuACCGGGa- -3'
miRNA:   3'- -GC-UAGUCGCCGUGGUCuu-UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 28787 0.66 0.909323
Target:  5'- ---gCAGCGGCGCgugCAGGGcuGCCGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUG---GUCUU--UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 31813 0.66 0.937172
Target:  5'- gCGGUgGGCGGCGCgggggCAGAGugCgAGGa- -3'
miRNA:   3'- -GCUAgUCGCCGUG-----GUCUUugG-UCCag -5'
6614 3' -54.5 NC_001847.1 + 32939 0.68 0.852197
Target:  5'- cCGG-CGGCGGgGCCgggggggcggaGGAGGCCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCgUGG-----------UCUUUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 32992 0.66 0.932101
Target:  5'- gCGggCAG-GGCgGCCGGAGcgGCCGGGg- -3'
miRNA:   3'- -GCuaGUCgCCG-UGGUCUU--UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 33030 0.68 0.867086
Target:  5'- gCGAggcgCGgacGCGGCGCaGGAguuuauuGACCGGGUCg -3'
miRNA:   3'- -GCUa---GU---CGCCGUGgUCU-------UUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 33706 0.66 0.937172
Target:  5'- gGcgCGGCGGCGCguGGccgAGCUGGGg- -3'
miRNA:   3'- gCuaGUCGCCGUGguCU---UUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 35266 0.68 0.86013
Target:  5'- aGAUCAGCcGCGCUAGAAG--AGGUa -3'
miRNA:   3'- gCUAGUCGcCGUGGUCUUUggUCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.