miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 35308 0.66 0.921211
Target:  5'- cCGAgCGGCGcGCGCUGGAAGCgGGcGUg -3'
miRNA:   3'- -GCUaGUCGC-CGUGGUCUUUGgUC-CAg -5'
6614 3' -54.5 NC_001847.1 + 37000 0.66 0.928939
Target:  5'- cCGAgcggCGGCGGCGcgcucgagcugacgcCCGcGGACCuGGUCg -3'
miRNA:   3'- -GCUa---GUCGCCGU---------------GGUcUUUGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 42967 0.66 0.91178
Target:  5'- aCGGaCGGCGGCguucccggcaacaacGCCGGGAacgccGCCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCG---------------UGGUCUU-----UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 43297 0.7 0.772369
Target:  5'- uGAUC-GC-GCACCAGGaggcGugCAGGUCg -3'
miRNA:   3'- gCUAGuCGcCGUGGUCU----UugGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 46373 0.7 0.743073
Target:  5'- --cUCGGCGGaCACCAGcAACCcGGUg -3'
miRNA:   3'- gcuAGUCGCC-GUGGUCuUUGGuCCAg -5'
6614 3' -54.5 NC_001847.1 + 47704 0.68 0.844055
Target:  5'- -cGUUGGCGGcCGCCGGGAacGCCAGcccGUCg -3'
miRNA:   3'- gcUAGUCGCC-GUGGUCUU--UGGUC---CAG- -5'
6614 3' -54.5 NC_001847.1 + 48175 0.69 0.821964
Target:  5'- cCGGcCGGCGGCguccugcugugccgcGCCGGcgGCCAGGg- -3'
miRNA:   3'- -GCUaGUCGCCG---------------UGGUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 48245 0.67 0.882613
Target:  5'- uCGAUCAGCuGGCccucgucgcgcACCccgcAGGCUAGGUCg -3'
miRNA:   3'- -GCUAGUCG-CCG-----------UGGuc--UUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 50739 0.66 0.909323
Target:  5'- cCGG-CuGCGGCACCGGcuGCCccGGUUu -3'
miRNA:   3'- -GCUaGuCGCCGUGGUCuuUGGu-CCAG- -5'
6614 3' -54.5 NC_001847.1 + 51518 0.66 0.915391
Target:  5'- cCGGU--GCGGCGCCGGcAGGCgGGGg- -3'
miRNA:   3'- -GCUAguCGCCGUGGUC-UUUGgUCCag -5'
6614 3' -54.5 NC_001847.1 + 52128 0.66 0.936676
Target:  5'- gGGcCGGCGGCGCCccagcGGAccgacgaggccguGGCCAGGcUCc -3'
miRNA:   3'- gCUaGUCGCCGUGG-----UCU-------------UUGGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 52670 0.66 0.915391
Target:  5'- --uUCGGCGGCcCCGuggccGggGCCGGGcCc -3'
miRNA:   3'- gcuAGUCGCCGuGGU-----CuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 54493 0.78 0.314634
Target:  5'- aCGA-CGGCGGCGCC-GggGCCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCGUGGuCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 54693 0.67 0.881896
Target:  5'- gCGG-CGGCGGCGCCcgcgGGGAggacgacGCgCGGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUGG----UCUU-------UG-GUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 54857 0.72 0.61938
Target:  5'- aCGAgcaUGGCGcGCGCC-GAAGCCGGGUUa -3'
miRNA:   3'- -GCUa--GUCGC-CGUGGuCUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 55362 0.67 0.896449
Target:  5'- aCGcgCcGCgGGCGCCGGAGAC--GGUCg -3'
miRNA:   3'- -GCuaGuCG-CCGUGGUCUUUGguCCAG- -5'
6614 3' -54.5 NC_001847.1 + 56402 0.68 0.852197
Target:  5'- aGGUCGGcCGGCGCgGGGAcaGCCAccGcGUCg -3'
miRNA:   3'- gCUAGUC-GCCGUGgUCUU--UGGU--C-CAG- -5'
6614 3' -54.5 NC_001847.1 + 57539 0.68 0.827176
Target:  5'- ---cCAGCGGCgccGCCAGAAA-CGGGUg -3'
miRNA:   3'- gcuaGUCGCCG---UGGUCUUUgGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 57966 0.68 0.827176
Target:  5'- gCGGUC-GCGGCGUCGGGAGgCAGGa- -3'
miRNA:   3'- -GCUAGuCGCCGUGGUCUUUgGUCCag -5'
6614 3' -54.5 NC_001847.1 + 58121 0.68 0.867848
Target:  5'- gGcgCGGCGgaugaGCGCCAGGAccuCCuGGUCg -3'
miRNA:   3'- gCuaGUCGC-----CGUGGUCUUu--GGuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.