miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 58296 0.66 0.937172
Target:  5'- gCGA-CGGCGGCgGCCGGcAGGCCGGc-- -3'
miRNA:   3'- -GCUaGUCGCCG-UGGUC-UUUGGUCcag -5'
6614 3' -54.5 NC_001847.1 + 58566 0.69 0.800488
Target:  5'- ---gCGGCGGCgaagAUCGGggGCCGGGcCg -3'
miRNA:   3'- gcuaGUCGCCG----UGGUCuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 59280 0.66 0.921211
Target:  5'- uCGAgcccCGGCGGCGggaaaccguacCCAGGGuGCCAGGg- -3'
miRNA:   3'- -GCUa---GUCGCCGU-----------GGUCUU-UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 61777 0.71 0.692349
Target:  5'- aCGGUgGcGCGGUGCgGGuGGGCCGGGUCg -3'
miRNA:   3'- -GCUAgU-CGCCGUGgUC-UUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 61829 0.7 0.737096
Target:  5'- aGGUCGGCGGcCAggguggugucguacuCCAGggG-CGGGUCg -3'
miRNA:   3'- gCUAGUCGCC-GU---------------GGUCuuUgGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 62754 0.73 0.567376
Target:  5'- aCGAacacCAGCaccGGCGCUAGGAccACCGGGUCu -3'
miRNA:   3'- -GCUa---GUCG---CCGUGGUCUU--UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 63285 0.81 0.218528
Target:  5'- aGAUgAGCGGCGgCGGAAgcACCGGGUCc -3'
miRNA:   3'- gCUAgUCGCCGUgGUCUU--UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 63741 0.67 0.903008
Target:  5'- ---aCAGCGGCACCGGGAuguuGCCguugaugauacGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUGGUCUU----UGG-----------UCCag -5'
6614 3' -54.5 NC_001847.1 + 64445 0.66 0.926781
Target:  5'- -aGUCGGCGGCcacgGCCAGccccGGGCCcgcGGUCc -3'
miRNA:   3'- gcUAGUCGCCG----UGGUC----UUUGGu--CCAG- -5'
6614 3' -54.5 NC_001847.1 + 64467 0.66 0.915391
Target:  5'- ---gCGGCGGCGCgGGggGCCgaagcAGGg- -3'
miRNA:   3'- gcuaGUCGCCGUGgUCuuUGG-----UCCag -5'
6614 3' -54.5 NC_001847.1 + 66058 0.71 0.682008
Target:  5'- uCGG-CGGCGGCGCCGGggGCgacgCGGGc- -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCuuUG----GUCCag -5'
6614 3' -54.5 NC_001847.1 + 66243 0.68 0.844055
Target:  5'- aGcgCGGCGGCGCuCGGcaugcuGGGCCGGGg- -3'
miRNA:   3'- gCuaGUCGCCGUG-GUC------UUUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 68972 0.66 0.921211
Target:  5'- gGggCGGcCGGCGCCAGc--CCGGGa- -3'
miRNA:   3'- gCuaGUC-GCCGUGGUCuuuGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 69463 0.67 0.88965
Target:  5'- gCGcgCGGCGGCGgCGGGgcuccugcuGGCCGGGc- -3'
miRNA:   3'- -GCuaGUCGCCGUgGUCU---------UUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 72039 0.69 0.818454
Target:  5'- gCGG-CGGCGGCcCCGGGGcguACCcGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGuGGUCUU---UGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 72716 0.68 0.827176
Target:  5'- cCGGUgGGCGGCAgCAGgcACgCGGG-Ca -3'
miRNA:   3'- -GCUAgUCGCCGUgGUCuuUG-GUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 73786 0.66 0.937172
Target:  5'- aCGAgcgCGG-GGCGCUGGAAgcgcacGCCGuGGUCg -3'
miRNA:   3'- -GCUa--GUCgCCGUGGUCUU------UGGU-CCAG- -5'
6614 3' -54.5 NC_001847.1 + 75100 0.67 0.887563
Target:  5'- -cGUCGGCGGCGCCccggcgcuugcccgAGAAggcccgggccccGCCGGGg- -3'
miRNA:   3'- gcUAGUCGCCGUGG--------------UCUU------------UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 75201 0.66 0.909323
Target:  5'- gGGUCugucuGCaGGCGCaCGgucagcGAGGCCAGGUCc -3'
miRNA:   3'- gCUAGu----CG-CCGUG-GU------CUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 75382 0.67 0.88965
Target:  5'- uGggCA-CGGCACCGGAcgcGGCCAGcgaGUCg -3'
miRNA:   3'- gCuaGUcGCCGUGGUCU---UUGGUC---CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.