miRNA display CGI


Results 101 - 120 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 93075 0.73 0.557089
Target:  5'- cCGAUgcgccgCAGCGGCACCAGcc-CCAGG-Ca -3'
miRNA:   3'- -GCUA------GUCGCCGUGGUCuuuGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 93529 0.69 0.781886
Target:  5'- ---cCGGCGGCcCCGGAGcgcCCGGGUUa -3'
miRNA:   3'- gcuaGUCGCCGuGGUCUUu--GGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 93834 0.72 0.661206
Target:  5'- cCGGcCGGCGGCGCCGGAAAC---GUCg -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCUUUGgucCAG- -5'
6614 3' -54.5 NC_001847.1 + 95274 0.72 0.661206
Target:  5'- gCGAUCGGgGGCGCCGGcAAGCUugcGGcCg -3'
miRNA:   3'- -GCUAGUCgCCGUGGUC-UUUGGu--CCaG- -5'
6614 3' -54.5 NC_001847.1 + 95824 0.69 0.818454
Target:  5'- cCGGcUCGGCGGCAggGGcAAGCCAGG-Ca -3'
miRNA:   3'- -GCU-AGUCGCCGUggUC-UUUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 96078 0.67 0.875344
Target:  5'- cCGG-CGGCGGCAauggcGGAGCCGGaGUCg -3'
miRNA:   3'- -GCUaGUCGCCGUggu--CUUUGGUC-CAG- -5'
6614 3' -54.5 NC_001847.1 + 96189 0.7 0.772369
Target:  5'- cCGG-CAGCGGCaauggcgggGCCGGAGucgggGCCGGaGUCg -3'
miRNA:   3'- -GCUaGUCGCCG---------UGGUCUU-----UGGUC-CAG- -5'
6614 3' -54.5 NC_001847.1 + 96258 0.67 0.875344
Target:  5'- cCGG-CGGCGGCaauggcgggGCCGGA-ACCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCG---------UGGUCUuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 97006 0.73 0.598493
Target:  5'- gGGUCGGCGGCGCUGGccGCgGGGg- -3'
miRNA:   3'- gCUAGUCGCCGUGGUCuuUGgUCCag -5'
6614 3' -54.5 NC_001847.1 + 97885 0.69 0.78094
Target:  5'- -aGUCGGCGGCGCgGauggcGAAcagcgcgccguccGCCGGGUCg -3'
miRNA:   3'- gcUAGUCGCCGUGgU-----CUU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 97938 0.67 0.896449
Target:  5'- cCGccaAGCGGCACCGGGcgccucgcACCGGGcUCu -3'
miRNA:   3'- -GCuagUCGCCGUGGUCUu-------UGGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 100332 0.74 0.516545
Target:  5'- cCGGUCGGCcugccGCGCCAGcgGCCgcGGGUCg -3'
miRNA:   3'- -GCUAGUCGc----CGUGGUCuuUGG--UCCAG- -5'
6614 3' -54.5 NC_001847.1 + 100387 0.66 0.937172
Target:  5'- gCGcgCAGCcGCGCCAGcucGGCCGcGUCg -3'
miRNA:   3'- -GCuaGUCGcCGUGGUCu--UUGGUcCAG- -5'
6614 3' -54.5 NC_001847.1 + 100743 0.67 0.875344
Target:  5'- cCGAgcUCu-CGGgGCCGGGGuCCAGGUCg -3'
miRNA:   3'- -GCU--AGucGCCgUGGUCUUuGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 100876 0.78 0.344351
Target:  5'- gGGUCGGCGGCaggggcgcggccgGCgGGAGACgGGGUCg -3'
miRNA:   3'- gCUAGUCGCCG-------------UGgUCUUUGgUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 101060 0.68 0.835712
Target:  5'- cCGAggcCGGCcccggGGcCGCCgcGGggGCCGGGUCg -3'
miRNA:   3'- -GCUa--GUCG-----CC-GUGG--UCuuUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 101519 0.68 0.86013
Target:  5'- gCGGUCAGCcgccGCGCCcGucGCCAGGg- -3'
miRNA:   3'- -GCUAGUCGc---CGUGGuCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 102554 0.67 0.883327
Target:  5'- gCGA-CGGCGGCcgcgACUAGGcgcagcuuggcguccGCCAGGUCg -3'
miRNA:   3'- -GCUaGUCGCCG----UGGUCUu--------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 103367 0.69 0.799572
Target:  5'- aCGuggCGGCGGaCGCCAGcGccgcgucuccggcGCCGGGUCc -3'
miRNA:   3'- -GCua-GUCGCC-GUGGUCuU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 104036 0.66 0.937172
Target:  5'- ---cCAGCGcGCGCCGcccgcAGGCCAGGUa -3'
miRNA:   3'- gcuaGUCGC-CGUGGUc----UUUGGUCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.