miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 95824 0.69 0.818454
Target:  5'- cCGGcUCGGCGGCAggGGcAAGCCAGG-Ca -3'
miRNA:   3'- -GCU-AGUCGCCGUggUC-UUUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 95274 0.72 0.661206
Target:  5'- gCGAUCGGgGGCGCCGGcAAGCUugcGGcCg -3'
miRNA:   3'- -GCUAGUCgCCGUGGUC-UUUGGu--CCaG- -5'
6614 3' -54.5 NC_001847.1 + 93834 0.72 0.661206
Target:  5'- cCGGcCGGCGGCGCCGGAAAC---GUCg -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCUUUGgucCAG- -5'
6614 3' -54.5 NC_001847.1 + 93529 0.69 0.781886
Target:  5'- ---cCGGCGGCcCCGGAGcgcCCGGGUUa -3'
miRNA:   3'- gcuaGUCGCCGuGGUCUUu--GGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 93075 0.73 0.557089
Target:  5'- cCGAUgcgccgCAGCGGCACCAGcc-CCAGG-Ca -3'
miRNA:   3'- -GCUA------GUCGCCGUGGUCuuuGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 90841 0.75 0.458145
Target:  5'- aGAUCagcgAGCGGCGCCccGggGCCGGGg- -3'
miRNA:   3'- gCUAG----UCGCCGUGGu-CuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 90608 0.66 0.92064
Target:  5'- gGAUaAGCGGCACCGcGAGcucgcggacggcgGCCAGcucGUCa -3'
miRNA:   3'- gCUAgUCGCCGUGGU-CUU-------------UGGUC---CAG- -5'
6614 3' -54.5 NC_001847.1 + 90315 0.68 0.835712
Target:  5'- gCGuUCGGUGGgGCCGccGggGCCGGGg- -3'
miRNA:   3'- -GCuAGUCGCCgUGGU--CuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 85668 0.71 0.723019
Target:  5'- uGAUCAGCaGCAgCAGc-GCCAGGcCg -3'
miRNA:   3'- gCUAGUCGcCGUgGUCuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 85241 0.75 0.477238
Target:  5'- gCGGcCGGCGGCGCCAGGugcGCgAGGUa -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCUu--UGgUCCAg -5'
6614 3' -54.5 NC_001847.1 + 85086 0.73 0.598493
Target:  5'- uGAUCAGCGcCAgCAGGccgccGGCCAGGUUg -3'
miRNA:   3'- gCUAGUCGCcGUgGUCU-----UUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 81951 0.7 0.772369
Target:  5'- uCGAggUGGCGGCgcGCCAc-AGCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGCCG--UGGUcuUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 81489 0.66 0.915391
Target:  5'- aGuUgAGCGGC-CCGGguGCCcGGUCu -3'
miRNA:   3'- gCuAgUCGCCGuGGUCuuUGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 81286 0.66 0.915391
Target:  5'- gCGGUCGGCGcCGCCAGcgccGCCAGcGcCg -3'
miRNA:   3'- -GCUAGUCGCcGUGGUCuu--UGGUC-CaG- -5'
6614 3' -54.5 NC_001847.1 + 81231 0.67 0.88965
Target:  5'- gCGG-CAGCGGCGgCGG--GCCAGGc- -3'
miRNA:   3'- -GCUaGUCGCCGUgGUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 81185 0.7 0.769488
Target:  5'- aGGgcucgCGGCGGCGCCAGccggcgcgcgcguaGAugCAGGcUCg -3'
miRNA:   3'- gCUa----GUCGCCGUGGUC--------------UUugGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 80641 0.69 0.809555
Target:  5'- gCGA-CGGCGGCGCUcgcgGGAGACCcGG-Cg -3'
miRNA:   3'- -GCUaGUCGCCGUGG----UCUUUGGuCCaG- -5'
6614 3' -54.5 NC_001847.1 + 80197 0.66 0.915391
Target:  5'- ----gAGCGGC-CCGuuAACUAGGUCg -3'
miRNA:   3'- gcuagUCGCCGuGGUcuUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 79765 1.1 0.002995
Target:  5'- gCGAUCAGCGGCACCAGAAACCAGGUCu -3'
miRNA:   3'- -GCUAGUCGCCGUGGUCUUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 79594 0.7 0.752953
Target:  5'- uCGggCGGgGGCGCCGGGGgcguugucGCC-GGUCg -3'
miRNA:   3'- -GCuaGUCgCCGUGGUCUU--------UGGuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.