Results 61 - 80 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6614 | 3' | -54.5 | NC_001847.1 | + | 79093 | 0.68 | 0.852197 |
Target: 5'- --uUCAGCGGCGCCuc---CCAGGg- -3' miRNA: 3'- gcuAGUCGCCGUGGucuuuGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 79053 | 0.7 | 0.762721 |
Target: 5'- aCGcgCuuaacGCGGCGCCGGA-GCCGGG-Cg -3' miRNA: 3'- -GCuaGu----CGCCGUGGUCUuUGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 78135 | 0.73 | 0.608927 |
Target: 5'- ---gCAGCaGGCACCAGGAcgugGCCAGG-Cg -3' miRNA: 3'- gcuaGUCG-CCGUGGUCUU----UGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 76482 | 0.66 | 0.937172 |
Target: 5'- aCGG-CAGCGGCGCCugcagcgccuGGGAGCCcGuGUUc -3' miRNA: 3'- -GCUaGUCGCCGUGG----------UCUUUGGuC-CAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 76394 | 0.66 | 0.909323 |
Target: 5'- uCGGg-GGgGGCGCCGGggGCCGcGG-Cg -3' miRNA: 3'- -GCUagUCgCCGUGGUCuuUGGU-CCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 75382 | 0.67 | 0.88965 |
Target: 5'- uGggCA-CGGCACCGGAcgcGGCCAGcgaGUCg -3' miRNA: 3'- gCuaGUcGCCGUGGUCU---UUGGUC---CAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 75201 | 0.66 | 0.909323 |
Target: 5'- gGGUCugucuGCaGGCGCaCGgucagcGAGGCCAGGUCc -3' miRNA: 3'- gCUAGu----CG-CCGUG-GU------CUUUGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 75100 | 0.67 | 0.887563 |
Target: 5'- -cGUCGGCGGCGCCccggcgcuugcccgAGAAggcccgggccccGCCGGGg- -3' miRNA: 3'- gcUAGUCGCCGUGG--------------UCUU------------UGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 73786 | 0.66 | 0.937172 |
Target: 5'- aCGAgcgCGG-GGCGCUGGAAgcgcacGCCGuGGUCg -3' miRNA: 3'- -GCUa--GUCgCCGUGGUCUU------UGGU-CCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 72716 | 0.68 | 0.827176 |
Target: 5'- cCGGUgGGCGGCAgCAGgcACgCGGG-Ca -3' miRNA: 3'- -GCUAgUCGCCGUgGUCuuUG-GUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 72039 | 0.69 | 0.818454 |
Target: 5'- gCGG-CGGCGGCcCCGGGGcguACCcGGUCc -3' miRNA: 3'- -GCUaGUCGCCGuGGUCUU---UGGuCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 69463 | 0.67 | 0.88965 |
Target: 5'- gCGcgCGGCGGCGgCGGGgcuccugcuGGCCGGGc- -3' miRNA: 3'- -GCuaGUCGCCGUgGUCU---------UUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 68972 | 0.66 | 0.921211 |
Target: 5'- gGggCGGcCGGCGCCAGc--CCGGGa- -3' miRNA: 3'- gCuaGUC-GCCGUGGUCuuuGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 66243 | 0.68 | 0.844055 |
Target: 5'- aGcgCGGCGGCGCuCGGcaugcuGGGCCGGGg- -3' miRNA: 3'- gCuaGUCGCCGUG-GUC------UUUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 66058 | 0.71 | 0.682008 |
Target: 5'- uCGG-CGGCGGCGCCGGggGCgacgCGGGc- -3' miRNA: 3'- -GCUaGUCGCCGUGGUCuuUG----GUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 64467 | 0.66 | 0.915391 |
Target: 5'- ---gCGGCGGCGCgGGggGCCgaagcAGGg- -3' miRNA: 3'- gcuaGUCGCCGUGgUCuuUGG-----UCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 64445 | 0.66 | 0.926781 |
Target: 5'- -aGUCGGCGGCcacgGCCAGccccGGGCCcgcGGUCc -3' miRNA: 3'- gcUAGUCGCCG----UGGUC----UUUGGu--CCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 63741 | 0.67 | 0.903008 |
Target: 5'- ---aCAGCGGCACCGGGAuguuGCCguugaugauacGGGg- -3' miRNA: 3'- gcuaGUCGCCGUGGUCUU----UGG-----------UCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 63285 | 0.81 | 0.218528 |
Target: 5'- aGAUgAGCGGCGgCGGAAgcACCGGGUCc -3' miRNA: 3'- gCUAgUCGCCGUgGUCUU--UGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 62754 | 0.73 | 0.567376 |
Target: 5'- aCGAacacCAGCaccGGCGCUAGGAccACCGGGUCu -3' miRNA: 3'- -GCUa---GUCG---CCGUGGUCUU--UGGUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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