Results 81 - 100 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6614 | 3' | -54.5 | NC_001847.1 | + | 61829 | 0.7 | 0.737096 |
Target: 5'- aGGUCGGCGGcCAggguggugucguacuCCAGggG-CGGGUCg -3' miRNA: 3'- gCUAGUCGCC-GU---------------GGUCuuUgGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 61777 | 0.71 | 0.692349 |
Target: 5'- aCGGUgGcGCGGUGCgGGuGGGCCGGGUCg -3' miRNA: 3'- -GCUAgU-CGCCGUGgUC-UUUGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 59280 | 0.66 | 0.921211 |
Target: 5'- uCGAgcccCGGCGGCGggaaaccguacCCAGGGuGCCAGGg- -3' miRNA: 3'- -GCUa---GUCGCCGU-----------GGUCUU-UGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 58566 | 0.69 | 0.800488 |
Target: 5'- ---gCGGCGGCgaagAUCGGggGCCGGGcCg -3' miRNA: 3'- gcuaGUCGCCG----UGGUCuuUGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 58296 | 0.66 | 0.937172 |
Target: 5'- gCGA-CGGCGGCgGCCGGcAGGCCGGc-- -3' miRNA: 3'- -GCUaGUCGCCG-UGGUC-UUUGGUCcag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 58121 | 0.68 | 0.867848 |
Target: 5'- gGcgCGGCGgaugaGCGCCAGGAccuCCuGGUCg -3' miRNA: 3'- gCuaGUCGC-----CGUGGUCUUu--GGuCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 57966 | 0.68 | 0.827176 |
Target: 5'- gCGGUC-GCGGCGUCGGGAGgCAGGa- -3' miRNA: 3'- -GCUAGuCGCCGUGGUCUUUgGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 57539 | 0.68 | 0.827176 |
Target: 5'- ---cCAGCGGCgccGCCAGAAA-CGGGUg -3' miRNA: 3'- gcuaGUCGCCG---UGGUCUUUgGUCCAg -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 56402 | 0.68 | 0.852197 |
Target: 5'- aGGUCGGcCGGCGCgGGGAcaGCCAccGcGUCg -3' miRNA: 3'- gCUAGUC-GCCGUGgUCUU--UGGU--C-CAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 55362 | 0.67 | 0.896449 |
Target: 5'- aCGcgCcGCgGGCGCCGGAGAC--GGUCg -3' miRNA: 3'- -GCuaGuCG-CCGUGGUCUUUGguCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 54857 | 0.72 | 0.61938 |
Target: 5'- aCGAgcaUGGCGcGCGCC-GAAGCCGGGUUa -3' miRNA: 3'- -GCUa--GUCGC-CGUGGuCUUUGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 54693 | 0.67 | 0.881896 |
Target: 5'- gCGG-CGGCGGCGCCcgcgGGGAggacgacGCgCGGGUCc -3' miRNA: 3'- -GCUaGUCGCCGUGG----UCUU-------UG-GUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 54493 | 0.78 | 0.314634 |
Target: 5'- aCGA-CGGCGGCGCC-GggGCCGGGg- -3' miRNA: 3'- -GCUaGUCGCCGUGGuCuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 52670 | 0.66 | 0.915391 |
Target: 5'- --uUCGGCGGCcCCGuggccGggGCCGGGcCc -3' miRNA: 3'- gcuAGUCGCCGuGGU-----CuuUGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 52128 | 0.66 | 0.936676 |
Target: 5'- gGGcCGGCGGCGCCccagcGGAccgacgaggccguGGCCAGGcUCc -3' miRNA: 3'- gCUaGUCGCCGUGG-----UCU-------------UUGGUCC-AG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 51518 | 0.66 | 0.915391 |
Target: 5'- cCGGU--GCGGCGCCGGcAGGCgGGGg- -3' miRNA: 3'- -GCUAguCGCCGUGGUC-UUUGgUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 50739 | 0.66 | 0.909323 |
Target: 5'- cCGG-CuGCGGCACCGGcuGCCccGGUUu -3' miRNA: 3'- -GCUaGuCGCCGUGGUCuuUGGu-CCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 48245 | 0.67 | 0.882613 |
Target: 5'- uCGAUCAGCuGGCccucgucgcgcACCccgcAGGCUAGGUCg -3' miRNA: 3'- -GCUAGUCG-CCG-----------UGGuc--UUUGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 48175 | 0.69 | 0.821964 |
Target: 5'- cCGGcCGGCGGCguccugcugugccgcGCCGGcgGCCAGGg- -3' miRNA: 3'- -GCUaGUCGCCG---------------UGGUCuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 47704 | 0.68 | 0.844055 |
Target: 5'- -cGUUGGCGGcCGCCGGGAacGCCAGcccGUCg -3' miRNA: 3'- gcUAGUCGCC-GUGGUCUU--UGGUC---CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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