miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 103367 0.69 0.799572
Target:  5'- aCGuggCGGCGGaCGCCAGcGccgcgucuccggcGCCGGGUCc -3'
miRNA:   3'- -GCua-GUCGCC-GUGGUCuU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 81185 0.7 0.769488
Target:  5'- aGGgcucgCGGCGGCGCCAGccggcgcgcgcguaGAugCAGGcUCg -3'
miRNA:   3'- gCUa----GUCGCCGUGGUC--------------UUugGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 85086 0.73 0.598493
Target:  5'- uGAUCAGCGcCAgCAGGccgccGGCCAGGUUg -3'
miRNA:   3'- gCUAGUCGCcGUgGUCU-----UUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 130652 0.76 0.430293
Target:  5'- aGAUCGGCgaggacgccGGCGCCAGGGACgCGGGg- -3'
miRNA:   3'- gCUAGUCG---------CCGUGGUCUUUG-GUCCag -5'
6614 3' -54.5 NC_001847.1 + 115173 0.68 0.852197
Target:  5'- -aAUCGGCGGCGCCAaAAACCcacauguggaaGGGcCg -3'
miRNA:   3'- gcUAGUCGCCGUGGUcUUUGG-----------UCCaG- -5'
6614 3' -54.5 NC_001847.1 + 105848 0.69 0.818454
Target:  5'- cCGAgcagcUCGGCGGC-CCGGAGcacgcgcuCCGGGUg -3'
miRNA:   3'- -GCU-----AGUCGCCGuGGUCUUu-------GGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 61829 0.7 0.737096
Target:  5'- aGGUCGGCGGcCAggguggugucguacuCCAGggG-CGGGUCg -3'
miRNA:   3'- gCUAGUCGCC-GU---------------GGUCuuUgGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 100876 0.78 0.344351
Target:  5'- gGGUCGGCGGCaggggcgcggccgGCgGGAGACgGGGUCg -3'
miRNA:   3'- gCUAGUCGCCG-------------UGgUCUUUGgUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 72039 0.69 0.818454
Target:  5'- gCGG-CGGCGGCcCCGGGGcguACCcGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGuGGUCUU---UGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 54493 0.78 0.314634
Target:  5'- aCGA-CGGCGGCGCC-GggGCCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCGUGGuCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 79053 0.7 0.762721
Target:  5'- aCGcgCuuaacGCGGCGCCGGA-GCCGGG-Cg -3'
miRNA:   3'- -GCuaGu----CGCCGUGGUCUuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 3424 0.69 0.800488
Target:  5'- ---cCGGgGGCGCCAGGcgcAGCCcaggGGGUCg -3'
miRNA:   3'- gcuaGUCgCCGUGGUCU---UUGG----UCCAG- -5'
6614 3' -54.5 NC_001847.1 + 66058 0.71 0.682008
Target:  5'- uCGG-CGGCGGCGCCGGggGCgacgCGGGc- -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCuuUG----GUCCag -5'
6614 3' -54.5 NC_001847.1 + 16821 0.73 0.608927
Target:  5'- uCGggCAGCGGUGCCGGGuAGCCAGuGg- -3'
miRNA:   3'- -GCuaGUCGCCGUGGUCU-UUGGUC-Cag -5'
6614 3' -54.5 NC_001847.1 + 93075 0.73 0.557089
Target:  5'- cCGAUgcgccgCAGCGGCACCAGcc-CCAGG-Ca -3'
miRNA:   3'- -GCUA------GUCGCCGUGGUCuuuGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 85241 0.75 0.477238
Target:  5'- gCGGcCGGCGGCGCCAGGugcGCgAGGUa -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCUu--UGgUCCAg -5'
6614 3' -54.5 NC_001847.1 + 48245 0.67 0.882613
Target:  5'- uCGAUCAGCuGGCccucgucgcgcACCccgcAGGCUAGGUCg -3'
miRNA:   3'- -GCUAGUCG-CCG-----------UGGuc--UUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 35266 0.68 0.86013
Target:  5'- aGAUCAGCcGCGCUAGAAG--AGGUa -3'
miRNA:   3'- gCUAGUCGcCGUGGUCUUUggUCCAg -5'
6614 3' -54.5 NC_001847.1 + 101060 0.68 0.835712
Target:  5'- cCGAggcCGGCcccggGGcCGCCgcGGggGCCGGGUCg -3'
miRNA:   3'- -GCUa--GUCG-----CC-GUGG--UCuuUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 48175 0.69 0.821964
Target:  5'- cCGGcCGGCGGCguccugcugugccgcGCCGGcgGCCAGGg- -3'
miRNA:   3'- -GCUaGUCGCCG---------------UGGUCuuUGGUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.