miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 47704 0.68 0.844055
Target:  5'- -cGUUGGCGGcCGCCGGGAacGCCAGcccGUCg -3'
miRNA:   3'- gcUAGUCGCC-GUGGUCUU--UGGUC---CAG- -5'
6614 3' -54.5 NC_001847.1 + 61829 0.7 0.737096
Target:  5'- aGGUCGGCGGcCAggguggugucguacuCCAGggG-CGGGUCg -3'
miRNA:   3'- gCUAGUCGCC-GU---------------GGUCuuUgGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 100876 0.78 0.344351
Target:  5'- gGGUCGGCGGCaggggcgcggccgGCgGGAGACgGGGUCg -3'
miRNA:   3'- gCUAGUCGCCG-------------UGgUCUUUGgUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 66243 0.68 0.844055
Target:  5'- aGcgCGGCGGCGCuCGGcaugcuGGGCCGGGg- -3'
miRNA:   3'- gCuaGUCGCCGUG-GUC------UUUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 54493 0.78 0.314634
Target:  5'- aCGA-CGGCGGCGCC-GggGCCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCGUGGuCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 35308 0.66 0.921211
Target:  5'- cCGAgCGGCGcGCGCUGGAAGCgGGcGUg -3'
miRNA:   3'- -GCUaGUCGC-CGUGGUCUUUGgUC-CAg -5'
6614 3' -54.5 NC_001847.1 + 85241 0.75 0.477238
Target:  5'- gCGGcCGGCGGCGCCAGGugcGCgAGGUa -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCUu--UGgUCCAg -5'
6614 3' -54.5 NC_001847.1 + 68972 0.66 0.921211
Target:  5'- gGggCGGcCGGCGCCAGc--CCGGGa- -3'
miRNA:   3'- gCuaGUC-GCCGUGGUCuuuGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 23507 0.66 0.915391
Target:  5'- ----aGGUGGCAcCCAGAGcacACgAGGUCg -3'
miRNA:   3'- gcuagUCGCCGU-GGUCUU---UGgUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 131600 0.66 0.909323
Target:  5'- ---gCAGCGGCGCgugCAGGGcuGCCGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUG---GUCUU--UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 81231 0.67 0.88965
Target:  5'- gCGG-CAGCGGCGgCGG--GCCAGGc- -3'
miRNA:   3'- -GCUaGUCGCCGUgGUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 48245 0.67 0.882613
Target:  5'- uCGAUCAGCuGGCccucgucgcgcACCccgcAGGCUAGGUCg -3'
miRNA:   3'- -GCUAGUCG-CCG-----------UGGuc--UUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 35266 0.68 0.86013
Target:  5'- aGAUCAGCcGCGCUAGAAG--AGGUa -3'
miRNA:   3'- gCUAGUCGcCGUGGUCUUUggUCCAg -5'
6614 3' -54.5 NC_001847.1 + 125237 0.68 0.827176
Target:  5'- gCGGg-GGCGGgGCCcGAGACCAcgcGGUCg -3'
miRNA:   3'- -GCUagUCGCCgUGGuCUUUGGU---CCAG- -5'
6614 3' -54.5 NC_001847.1 + 72039 0.69 0.818454
Target:  5'- gCGG-CGGCGGCcCCGGGGcguACCcGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGuGGUCUU---UGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 103367 0.69 0.799572
Target:  5'- aCGuggCGGCGGaCGCCAGcGccgcgucuccggcGCCGGGUCc -3'
miRNA:   3'- -GCua-GUCGCC-GUGGUCuU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 81185 0.7 0.769488
Target:  5'- aGGgcucgCGGCGGCGCCAGccggcgcgcgcguaGAugCAGGcUCg -3'
miRNA:   3'- gCUa----GUCGCCGUGGUC--------------UUugGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 66058 0.71 0.682008
Target:  5'- uCGG-CGGCGGCGCCGGggGCgacgCGGGc- -3'
miRNA:   3'- -GCUaGUCGCCGUGGUCuuUG----GUCCag -5'
6614 3' -54.5 NC_001847.1 + 16821 0.73 0.608927
Target:  5'- uCGggCAGCGGUGCCGGGuAGCCAGuGg- -3'
miRNA:   3'- -GCuaGUCGCCGUGGUCU-UUGGUC-Cag -5'
6614 3' -54.5 NC_001847.1 + 93075 0.73 0.557089
Target:  5'- cCGAUgcgccgCAGCGGCACCAGcc-CCAGG-Ca -3'
miRNA:   3'- -GCUA------GUCGCCGUGGUCuuuGGUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.