miRNA display CGI


Results 81 - 100 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 26104 0.66 0.921211
Target:  5'- gGAgCAGUGGCGCUgggcaGGAAGCgGGGa- -3'
miRNA:   3'- gCUaGUCGCCGUGG-----UCUUUGgUCCag -5'
6614 3' -54.5 NC_001847.1 + 16270 0.66 0.926781
Target:  5'- uGuAUC-GCGGCAUCGGGuacGCCggcGGGUCg -3'
miRNA:   3'- gC-UAGuCGCCGUGGUCUu--UGG---UCCAG- -5'
6614 3' -54.5 NC_001847.1 + 127306 0.66 0.932101
Target:  5'- ---cCGGCGGUGCCGGAGACaCGGcGa- -3'
miRNA:   3'- gcuaGUCGCCGUGGUCUUUG-GUC-Cag -5'
6614 3' -54.5 NC_001847.1 + 52128 0.66 0.936676
Target:  5'- gGGcCGGCGGCGCCccagcGGAccgacgaggccguGGCCAGGcUCc -3'
miRNA:   3'- gCUaGUCGCCGUGG-----UCU-------------UUGGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 57539 0.68 0.827176
Target:  5'- ---cCAGCGGCgccGCCAGAAA-CGGGUg -3'
miRNA:   3'- gcuaGUCGCCG---UGGUCUUUgGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 22424 0.68 0.827176
Target:  5'- gCGGg-GGCGGgGCCcGAGACCAcgcGGUCg -3'
miRNA:   3'- -GCUagUCGCCgUGGuCUUUGGU---CCAG- -5'
6614 3' -54.5 NC_001847.1 + 134220 0.71 0.692349
Target:  5'- cCGAg-GGCGGCGgUGGGAagGCCGGGUCc -3'
miRNA:   3'- -GCUagUCGCCGUgGUCUU--UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 123305 0.71 0.712864
Target:  5'- ----gGGCGGCGCCAGAGGCCuuacgccagAGGg- -3'
miRNA:   3'- gcuagUCGCCGUGGUCUUUGG---------UCCag -5'
6614 3' -54.5 NC_001847.1 + 46373 0.7 0.743073
Target:  5'- --cUCGGCGGaCACCAGcAACCcGGUg -3'
miRNA:   3'- gcuAGUCGCC-GUGGUCuUUGGuCCAg -5'
6614 3' -54.5 NC_001847.1 + 79594 0.7 0.752953
Target:  5'- uCGggCGGgGGCGCCGGGGgcguugucGCC-GGUCg -3'
miRNA:   3'- -GCuaGUCgCCGUGGUCUU--------UGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 18175 0.7 0.77141
Target:  5'- gCGGUCGGCgucgcagGGCAgCCGGAGcaccGCCAGG-Ca -3'
miRNA:   3'- -GCUAGUCG-------CCGU-GGUCUU----UGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 43297 0.7 0.772369
Target:  5'- uGAUC-GC-GCACCAGGaggcGugCAGGUCg -3'
miRNA:   3'- gCUAGuCGcCGUGGUCU----UugGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 81951 0.7 0.772369
Target:  5'- uCGAggUGGCGGCgcGCCAc-AGCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGCCG--UGGUcuUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 96189 0.7 0.772369
Target:  5'- cCGG-CAGCGGCaauggcgggGCCGGAGucgggGCCGGaGUCg -3'
miRNA:   3'- -GCUaGUCGCCG---------UGGUCUU-----UGGUC-CAG- -5'
6614 3' -54.5 NC_001847.1 + 97885 0.69 0.78094
Target:  5'- -aGUCGGCGGCGCgGauggcGAAcagcgcgccguccGCCGGGUCg -3'
miRNA:   3'- gcUAGUCGCCGUGgU-----CUU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 27771 0.69 0.781886
Target:  5'- gGAgagCAGCgaggacgacGGCGCCGGAGACgCGGGg- -3'
miRNA:   3'- gCUa--GUCG---------CCGUGGUCUUUG-GUCCag -5'
6614 3' -54.5 NC_001847.1 + 554 0.69 0.799572
Target:  5'- aCGuggCGGCGGaCGCCAGcGccgcgucuccggcGCCGGGUCc -3'
miRNA:   3'- -GCua-GUCGCC-GUGGUCuU-------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 58566 0.69 0.800488
Target:  5'- ---gCGGCGGCgaagAUCGGggGCCGGGcCg -3'
miRNA:   3'- gcuaGUCGCCG----UGGUCuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 3035 0.69 0.818454
Target:  5'- cCGAgcagcUCGGCGGC-CCGGAGcacgcgcuCCGGGUg -3'
miRNA:   3'- -GCU-----AGUCGCCGuGGUCUUu-------GGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 95824 0.69 0.818454
Target:  5'- cCGGcUCGGCGGCAggGGcAAGCCAGG-Ca -3'
miRNA:   3'- -GCU-AGUCGCCGUggUC-UUUGGUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.