miRNA display CGI


Results 101 - 120 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 46373 0.7 0.743073
Target:  5'- --cUCGGCGGaCACCAGcAACCcGGUg -3'
miRNA:   3'- gcuAGUCGCC-GUGGUCuUUGGuCCAg -5'
6614 3' -54.5 NC_001847.1 + 79594 0.7 0.752953
Target:  5'- uCGggCGGgGGCGCCGGGGgcguugucGCC-GGUCg -3'
miRNA:   3'- -GCuaGUCgCCGUGGUCUU--------UGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 18175 0.7 0.77141
Target:  5'- gCGGUCGGCgucgcagGGCAgCCGGAGcaccGCCAGG-Ca -3'
miRNA:   3'- -GCUAGUCG-------CCGU-GGUCUU----UGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 43297 0.7 0.772369
Target:  5'- uGAUC-GC-GCACCAGGaggcGugCAGGUCg -3'
miRNA:   3'- gCUAGuCGcCGUGGUCU----UugGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 81951 0.7 0.772369
Target:  5'- uCGAggUGGCGGCgcGCCAc-AGCCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGCCG--UGGUcuUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 57539 0.68 0.827176
Target:  5'- ---cCAGCGGCgccGCCAGAAA-CGGGUg -3'
miRNA:   3'- gcuaGUCGCCG---UGGUCUUUgGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 57966 0.68 0.827176
Target:  5'- gCGGUC-GCGGCGUCGGGAGgCAGGa- -3'
miRNA:   3'- -GCUAGuCGCCGUGGUCUUUgGUCCag -5'
6614 3' -54.5 NC_001847.1 + 96258 0.67 0.875344
Target:  5'- cCGG-CGGCGGCaauggcgggGCCGGA-ACCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCG---------UGGUCUuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 56402 0.68 0.852197
Target:  5'- aGGUCGGcCGGCGCgGGGAcaGCCAccGcGUCg -3'
miRNA:   3'- gCUAGUC-GCCGUGgUCUU--UGGU--C-CAG- -5'
6614 3' -54.5 NC_001847.1 + 108357 0.68 0.857772
Target:  5'- -cGUCuGCGGCGCgCAGGagggcgcgcgcacuGACCAGGcCg -3'
miRNA:   3'- gcUAGuCGCCGUG-GUCU--------------UUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 119707 0.68 0.852197
Target:  5'- --uUCAGCaGCGCCAGcuuAAACCAGcUCg -3'
miRNA:   3'- gcuAGUCGcCGUGGUC---UUUGGUCcAG- -5'
6614 3' -54.5 NC_001847.1 + 79093 0.68 0.852197
Target:  5'- --uUCAGCGGCGCCuc---CCAGGg- -3'
miRNA:   3'- gcuAGUCGCCGUGGucuuuGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 32939 0.68 0.852197
Target:  5'- cCGG-CGGCGGgGCCgggggggcggaGGAGGCCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCgUGG-----------UCUUUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 15387 0.68 0.844055
Target:  5'- gCGGUCGGCgucGGgGCU-GggGCCGGGUUu -3'
miRNA:   3'- -GCUAGUCG---CCgUGGuCuuUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 63285 0.81 0.218528
Target:  5'- aGAUgAGCGGCGgCGGAAgcACCGGGUCc -3'
miRNA:   3'- gCUAgUCGCCGUgGUCUU--UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 27839 0.76 0.430293
Target:  5'- aGAUCGGCgaggacgccGGCGCCAGGGACgCGGGg- -3'
miRNA:   3'- gCUAGUCG---------CCGUGGUCUUUG-GUCCag -5'
6614 3' -54.5 NC_001847.1 + 90841 0.75 0.458145
Target:  5'- aGAUCagcgAGCGGCGCCccGggGCCGGGg- -3'
miRNA:   3'- gCUAG----UCGCCGUGGu-CuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 3969 0.75 0.486931
Target:  5'- cCGG-CGGCgagGGCGCCGGggGCCGGG-Cg -3'
miRNA:   3'- -GCUaGUCG---CCGUGGUCuuUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 90315 0.68 0.835712
Target:  5'- gCGuUCGGUGGgGCCGccGggGCCGGGg- -3'
miRNA:   3'- -GCuAGUCGCCgUGGU--CuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 72716 0.68 0.827176
Target:  5'- cCGGUgGGCGGCAgCAGgcACgCGGG-Ca -3'
miRNA:   3'- -GCUAgUCGCCGUgGUCuuUG-GUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.