Results 41 - 60 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6614 | 3' | -54.5 | NC_001847.1 | + | 52128 | 0.66 | 0.936676 |
Target: 5'- gGGcCGGCGGCGCCccagcGGAccgacgaggccguGGCCAGGcUCc -3' miRNA: 3'- gCUaGUCGCCGUGG-----UCU-------------UUGGUCC-AG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 58296 | 0.66 | 0.937172 |
Target: 5'- gCGA-CGGCGGCgGCCGGcAGGCCGGc-- -3' miRNA: 3'- -GCUaGUCGCCG-UGGUC-UUUGGUCcag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 100387 | 0.66 | 0.937172 |
Target: 5'- gCGcgCAGCcGCGCCAGcucGGCCGcGUCg -3' miRNA: 3'- -GCuaGUCGcCGUGGUCu--UUGGUcCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 1223 | 0.66 | 0.937172 |
Target: 5'- ---cCAGCGcGCGCCGcccgcAGGCCAGGUa -3' miRNA: 3'- gcuaGUCGC-CGUGGUc----UUUGGUCCAg -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 73786 | 0.66 | 0.937172 |
Target: 5'- aCGAgcgCGG-GGCGCUGGAAgcgcacGCCGuGGUCg -3' miRNA: 3'- -GCUa--GUCgCCGUGGUCUU------UGGU-CCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 12503 | 0.66 | 0.921211 |
Target: 5'- gGAggccgCAGcCGGCGCgucguCAaAGACCAGGUCu -3' miRNA: 3'- gCUa----GUC-GCCGUG-----GUcUUUGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 1408 | 0.66 | 0.921211 |
Target: 5'- uCGcgCGGCGGCACgGGc-ACCGcGGUg -3' miRNA: 3'- -GCuaGUCGCCGUGgUCuuUGGU-CCAg -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 12950 | 0.67 | 0.882613 |
Target: 5'- gCGGUgGgGCGGCggGCCGGGgguGGCCcGGUCg -3' miRNA: 3'- -GCUAgU-CGCCG--UGGUCU---UUGGuCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 102554 | 0.67 | 0.883327 |
Target: 5'- gCGA-CGGCGGCcgcgACUAGGcgcagcuuggcguccGCCAGGUCg -3' miRNA: 3'- -GCUaGUCGCCG----UGGUCUu--------------UGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 111838 | 0.67 | 0.896449 |
Target: 5'- gCGGcUCAGCGGCGCCG--AGCUGGaGUUu -3' miRNA: 3'- -GCU-AGUCGCCGUGGUcuUUGGUC-CAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 97938 | 0.67 | 0.896449 |
Target: 5'- cCGccaAGCGGCACCGGGcgccucgcACCGGGcUCu -3' miRNA: 3'- -GCuagUCGCCGUGGUCUu-------UGGUCC-AG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 63741 | 0.67 | 0.903008 |
Target: 5'- ---aCAGCGGCACCGGGAuguuGCCguugaugauacGGGg- -3' miRNA: 3'- gcuaGUCGCCGUGGUCUU----UGG-----------UCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 119446 | 0.67 | 0.903008 |
Target: 5'- cCGA-CGGCGGgggcaaaGCC-GAGAuCCAGGUCg -3' miRNA: 3'- -GCUaGUCGCCg------UGGuCUUU-GGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 13156 | 0.66 | 0.909323 |
Target: 5'- gCGAccCAGCuGCGCCgAGAcGugCGGGUCg -3' miRNA: 3'- -GCUa-GUCGcCGUGG-UCU-UugGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 28787 | 0.66 | 0.909323 |
Target: 5'- ---gCAGCGGCGCgugCAGGGcuGCCGGGg- -3' miRNA: 3'- gcuaGUCGCCGUG---GUCUU--UGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 80197 | 0.66 | 0.915391 |
Target: 5'- ----gAGCGGC-CCGuuAACUAGGUCg -3' miRNA: 3'- gcuagUCGCCGuGGUcuUUGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 81286 | 0.66 | 0.915391 |
Target: 5'- gCGGUCGGCGcCGCCAGcgccGCCAGcGcCg -3' miRNA: 3'- -GCUAGUCGCcGUGGUCuu--UGGUC-CaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 51518 | 0.66 | 0.915391 |
Target: 5'- cCGGU--GCGGCGCCGGcAGGCgGGGg- -3' miRNA: 3'- -GCUAguCGCCGUGGUC-UUUGgUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 90608 | 0.66 | 0.92064 |
Target: 5'- gGAUaAGCGGCACCGcGAGcucgcggacggcgGCCAGcucGUCa -3' miRNA: 3'- gCUAgUCGCCGUGGU-CUU-------------UGGUC---CAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 105537 | 0.66 | 0.921211 |
Target: 5'- aCGG-CGGCGGCgaagugggGCgCAaAGGCCGGGUCu -3' miRNA: 3'- -GCUaGUCGCCG--------UG-GUcUUUGGUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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