miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 3' -54.5 NC_001847.1 + 96078 0.67 0.875344
Target:  5'- cCGG-CGGCGGCAauggcGGAGCCGGaGUCg -3'
miRNA:   3'- -GCUaGUCGCCGUggu--CUUUGGUC-CAG- -5'
6614 3' -54.5 NC_001847.1 + 2757 0.67 0.875344
Target:  5'- gGcgCGGCGGCGCCGGc-GCCGGcGcCc -3'
miRNA:   3'- gCuaGUCGCCGUGGUCuuUGGUC-CaG- -5'
6614 3' -54.5 NC_001847.1 + 58121 0.68 0.867848
Target:  5'- gGcgCGGCGgaugaGCGCCAGGAccuCCuGGUCg -3'
miRNA:   3'- gCuaGUCGC-----CGUGGUCUUu--GGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 33030 0.68 0.867086
Target:  5'- gCGAggcgCGgacGCGGCGCaGGAguuuauuGACCGGGUCg -3'
miRNA:   3'- -GCUa---GU---CGCCGUGgUCU-------UUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 101519 0.68 0.86013
Target:  5'- gCGGUCAGCcgccGCGCCcGucGCCAGGg- -3'
miRNA:   3'- -GCUAGUCGc---CGUGGuCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 16829 0.68 0.86013
Target:  5'- gGAUCGGUGGCGCgGGc-AUCGGGg- -3'
miRNA:   3'- gCUAGUCGCCGUGgUCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 108357 0.68 0.857772
Target:  5'- -cGUCuGCGGCGCgCAGGagggcgcgcgcacuGACCAGGcCg -3'
miRNA:   3'- gcUAGuCGCCGUG-GUCU--------------UUGGUCCaG- -5'
6614 3' -54.5 NC_001847.1 + 54693 0.67 0.881896
Target:  5'- gCGG-CGGCGGCGCCcgcgGGGAggacgacGCgCGGGUCc -3'
miRNA:   3'- -GCUaGUCGCCGUGG----UCUU-------UG-GUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 12950 0.67 0.882613
Target:  5'- gCGGUgGgGCGGCggGCCGGGgguGGCCcGGUCg -3'
miRNA:   3'- -GCUAgU-CGCCG--UGGUCU---UUGGuCCAG- -5'
6614 3' -54.5 NC_001847.1 + 80197 0.66 0.915391
Target:  5'- ----gAGCGGC-CCGuuAACUAGGUCg -3'
miRNA:   3'- gcuagUCGCCGuGGUcuUUGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 28787 0.66 0.909323
Target:  5'- ---gCAGCGGCGCgugCAGGGcuGCCGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUG---GUCUU--UGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 13156 0.66 0.909323
Target:  5'- gCGAccCAGCuGCGCCgAGAcGugCGGGUCg -3'
miRNA:   3'- -GCUa-GUCGcCGUGG-UCU-UugGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 119446 0.67 0.903008
Target:  5'- cCGA-CGGCGGgggcaaaGCC-GAGAuCCAGGUCg -3'
miRNA:   3'- -GCUaGUCGCCg------UGGuCUUU-GGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 63741 0.67 0.903008
Target:  5'- ---aCAGCGGCACCGGGAuguuGCCguugaugauacGGGg- -3'
miRNA:   3'- gcuaGUCGCCGUGGUCUU----UGG-----------UCCag -5'
6614 3' -54.5 NC_001847.1 + 97938 0.67 0.896449
Target:  5'- cCGccaAGCGGCACCGGGcgccucgcACCGGGcUCu -3'
miRNA:   3'- -GCuagUCGCCGUGGUCUu-------UGGUCC-AG- -5'
6614 3' -54.5 NC_001847.1 + 111838 0.67 0.896449
Target:  5'- gCGGcUCAGCGGCGCCG--AGCUGGaGUUu -3'
miRNA:   3'- -GCU-AGUCGCCGUGGUcuUUGGUC-CAG- -5'
6614 3' -54.5 NC_001847.1 + 102554 0.67 0.883327
Target:  5'- gCGA-CGGCGGCcgcgACUAGGcgcagcuuggcguccGCCAGGUCg -3'
miRNA:   3'- -GCUaGUCGCCG----UGGUCUu--------------UGGUCCAG- -5'
6614 3' -54.5 NC_001847.1 + 104036 0.66 0.937172
Target:  5'- ---cCAGCGcGCGCCGcccgcAGGCCAGGUa -3'
miRNA:   3'- gcuaGUCGC-CGUGGUc----UUUGGUCCAg -5'
6614 3' -54.5 NC_001847.1 + 54493 0.78 0.314634
Target:  5'- aCGA-CGGCGGCGCC-GggGCCGGGg- -3'
miRNA:   3'- -GCUaGUCGCCGUGGuCuuUGGUCCag -5'
6614 3' -54.5 NC_001847.1 + 100876 0.78 0.344351
Target:  5'- gGGUCGGCGGCaggggcgcggccgGCgGGAGACgGGGUCg -3'
miRNA:   3'- gCUAGUCGCCG-------------UGgUCUUUGgUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.