Results 101 - 120 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6614 | 3' | -54.5 | NC_001847.1 | + | 62754 | 0.73 | 0.567376 |
Target: 5'- aCGAacacCAGCaccGGCGCUAGGAccACCGGGUCu -3' miRNA: 3'- -GCUa---GUCG---CCGUGGUCUU--UGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 104952 | 0.73 | 0.557089 |
Target: 5'- gGGUCgaaGGCGaGCGCCGGgcGCCAGGg- -3' miRNA: 3'- gCUAG---UCGC-CGUGGUCuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 93075 | 0.73 | 0.557089 |
Target: 5'- cCGAUgcgccgCAGCGGCACCAGcc-CCAGG-Ca -3' miRNA: 3'- -GCUA------GUCGCCGUGGUCuuuGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 28687 | 0.73 | 0.557089 |
Target: 5'- gCGuAUCGGCGGCGCUGGccuACCGGGa- -3' miRNA: 3'- -GC-UAGUCGCCGUGGUCuu-UGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 111269 | 0.74 | 0.516545 |
Target: 5'- gGGUCggaGGCGGCGCCGG--GCCGGGg- -3' miRNA: 3'- gCUAG---UCGCCGUGGUCuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 85241 | 0.75 | 0.477238 |
Target: 5'- gCGGcCGGCGGCGCCAGGugcGCgAGGUa -3' miRNA: 3'- -GCUaGUCGCCGUGGUCUu--UGgUCCAg -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 130652 | 0.76 | 0.430293 |
Target: 5'- aGAUCGGCgaggacgccGGCGCCAGGGACgCGGGg- -3' miRNA: 3'- gCUAGUCG---------CCGUGGUCUUUG-GUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 100876 | 0.78 | 0.344351 |
Target: 5'- gGGUCGGCGGCaggggcgcggccgGCgGGAGACgGGGUCg -3' miRNA: 3'- gCUAGUCGCCG-------------UGgUCUUUGgUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 54493 | 0.78 | 0.314634 |
Target: 5'- aCGA-CGGCGGCGCC-GggGCCGGGg- -3' miRNA: 3'- -GCUaGUCGCCGUGGuCuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 85086 | 0.73 | 0.598493 |
Target: 5'- uGAUCAGCGcCAgCAGGccgccGGCCAGGUUg -3' miRNA: 3'- gCUAGUCGCcGUgGUCU-----UUGGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 16821 | 0.73 | 0.608927 |
Target: 5'- uCGggCAGCGGUGCCGGGuAGCCAGuGg- -3' miRNA: 3'- -GCuaGUCGCCGUGGUCU-UUGGUC-Cag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 93529 | 0.69 | 0.781886 |
Target: 5'- ---cCGGCGGCcCCGGAGcgcCCGGGUUa -3' miRNA: 3'- gcuaGUCGCCGuGGUCUUu--GGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 81185 | 0.7 | 0.769488 |
Target: 5'- aGGgcucgCGGCGGCGCCAGccggcgcgcgcguaGAugCAGGcUCg -3' miRNA: 3'- gCUa----GUCGCCGUGGUC--------------UUugGUCC-AG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 79053 | 0.7 | 0.762721 |
Target: 5'- aCGcgCuuaacGCGGCGCCGGA-GCCGGG-Cg -3' miRNA: 3'- -GCuaGu----CGCCGUGGUCUuUGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 61829 | 0.7 | 0.737096 |
Target: 5'- aGGUCGGCGGcCAggguggugucguacuCCAGggG-CGGGUCg -3' miRNA: 3'- gCUAGUCGCC-GU---------------GGUCuuUgGUCCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 85668 | 0.71 | 0.723019 |
Target: 5'- uGAUCAGCaGCAgCAGc-GCCAGGcCg -3' miRNA: 3'- gCUAGUCGcCGUgGUCuuUGGUCCaG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 21969 | 0.71 | 0.712864 |
Target: 5'- uGggCcGCGGCGCCGGuuGCCGcccgcGGUCg -3' miRNA: 3'- gCuaGuCGCCGUGGUCuuUGGU-----CCAG- -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 66058 | 0.71 | 0.682008 |
Target: 5'- uCGG-CGGCGGCGCCGGggGCgacgCGGGc- -3' miRNA: 3'- -GCUaGUCGCCGUGGUCuuUG----GUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 130909 | 0.72 | 0.629842 |
Target: 5'- gGggCGGCGGUGCCcucGggGCCAGGa- -3' miRNA: 3'- gCuaGUCGCCGUGGu--CuuUGGUCCag -5' |
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6614 | 3' | -54.5 | NC_001847.1 | + | 9726 | 0.73 | 0.608927 |
Target: 5'- gGGUCcuccGGCGGCGCCGGGGcagucGCCGucGGUCc -3' miRNA: 3'- gCUAG----UCGCCGUGGUCUU-----UGGU--CCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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