miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 5' -56 NC_001847.1 + 10205 0.66 0.927342
Target:  5'- gCCGCCGccGGgcCCAGGGcGCGCCc--- -3'
miRNA:   3'- -GGCGGCa-CCauGGUCCU-UGUGGcacc -5'
6614 5' -56 NC_001847.1 + 113018 0.66 0.927342
Target:  5'- gCCGCCGccGGgcCCAGGGcGCGCCc--- -3'
miRNA:   3'- -GGCGGCa-CCauGGUCCU-UGUGGcacc -5'
6614 5' -56 NC_001847.1 + 18034 0.66 0.927342
Target:  5'- gCGCCgGUGGUcCCAgcGGAGCuuuCCGUcucGGu -3'
miRNA:   3'- gGCGG-CACCAuGGU--CCUUGu--GGCA---CC- -5'
6614 5' -56 NC_001847.1 + 77495 0.66 0.927342
Target:  5'- cCCGCCGgcccgagucGGUgGCCGGGGAgcuCGCgCGUGc -3'
miRNA:   3'- -GGCGGCa--------CCA-UGGUCCUU---GUG-GCACc -5'
6614 5' -56 NC_001847.1 + 97934 0.66 0.921995
Target:  5'- gCCGCCGccaagcGGcACCGGGcgccucGCACCG-GGc -3'
miRNA:   3'- -GGCGGCa-----CCaUGGUCCu-----UGUGGCaCC- -5'
6614 5' -56 NC_001847.1 + 81003 0.66 0.921995
Target:  5'- gCGCUGcUGG-ACCAGGAggaGCGCa-UGGg -3'
miRNA:   3'- gGCGGC-ACCaUGGUCCU---UGUGgcACC- -5'
6614 5' -56 NC_001847.1 + 67173 0.66 0.921995
Target:  5'- gCCGCCGgucgacaagGGcGCgCAGGuagcacACGCCGUGc -3'
miRNA:   3'- -GGCGGCa--------CCaUG-GUCCu-----UGUGGCACc -5'
6614 5' -56 NC_001847.1 + 132597 0.66 0.921995
Target:  5'- gCCGCCccGGcccgGCggCGGGAGCGCCGccGGg -3'
miRNA:   3'- -GGCGGcaCCa---UG--GUCCUUGUGGCa-CC- -5'
6614 5' -56 NC_001847.1 + 29784 0.66 0.921995
Target:  5'- gCCGCCccGGcccgGCggCGGGAGCGCCGccGGg -3'
miRNA:   3'- -GGCGGcaCCa---UG--GUCCUUGUGGCa-CC- -5'
6614 5' -56 NC_001847.1 + 79400 0.66 0.921995
Target:  5'- gCCGCgCG-GGcgcgaGCC-GGAcCACCGUGGc -3'
miRNA:   3'- -GGCG-GCaCCa----UGGuCCUuGUGGCACC- -5'
6614 5' -56 NC_001847.1 + 62688 0.66 0.918674
Target:  5'- aCGCCGUGGUGcagcgccgcguCCAGcGugcGCauguuccgcguugcgGCCGUGGc -3'
miRNA:   3'- gGCGGCACCAU-----------GGUC-Cu--UG---------------UGGCACC- -5'
6614 5' -56 NC_001847.1 + 24253 0.66 0.916414
Target:  5'- cUCGCCGUGGUGgaCAGGcccCcCCGcUGGc -3'
miRNA:   3'- -GGCGGCACCAUg-GUCCuu-GuGGC-ACC- -5'
6614 5' -56 NC_001847.1 + 13545 0.66 0.916414
Target:  5'- aCCGCC-----GCCGGGGcgGCGCgGUGGg -3'
miRNA:   3'- -GGCGGcaccaUGGUCCU--UGUGgCACC- -5'
6614 5' -56 NC_001847.1 + 70694 0.66 0.916414
Target:  5'- gCCGCCGcGGgcgGCggCGGGGGCGcCCGcGGc -3'
miRNA:   3'- -GGCGGCaCCa--UG--GUCCUUGU-GGCaCC- -5'
6614 5' -56 NC_001847.1 + 79574 0.66 0.916414
Target:  5'- gCGCCG-GGcucgcgGCCucuucgggcGGGGGCGCCGgGGg -3'
miRNA:   3'- gGCGGCaCCa-----UGG---------UCCUUGUGGCaCC- -5'
6614 5' -56 NC_001847.1 + 31958 0.66 0.916414
Target:  5'- cCUGCCGcGGcGgCGGcGGGCcCCGUGGa -3'
miRNA:   3'- -GGCGGCaCCaUgGUC-CUUGuGGCACC- -5'
6614 5' -56 NC_001847.1 + 127066 0.66 0.916414
Target:  5'- cUCGCCGUGGUGgaCAGGcccCcCCGcUGGc -3'
miRNA:   3'- -GGCGGCACCAUg-GUCCuu-GuGGC-ACC- -5'
6614 5' -56 NC_001847.1 + 3243 0.66 0.915843
Target:  5'- gCGCCGUgcucgccGGcGgCAGGGGCGCCGg-- -3'
miRNA:   3'- gGCGGCA-------CCaUgGUCCUUGUGGCacc -5'
6614 5' -56 NC_001847.1 + 106056 0.66 0.915843
Target:  5'- gCGCCGUgcucgccGGcGgCAGGGGCGCCGg-- -3'
miRNA:   3'- gGCGGCA-------CCaUgGUCCUUGUGGCacc -5'
6614 5' -56 NC_001847.1 + 34356 0.66 0.910602
Target:  5'- cCCgGCCG-GGagagaagGCCAGcGAGCGCCaUGGc -3'
miRNA:   3'- -GG-CGGCaCCa------UGGUC-CUUGUGGcACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.